Epistatic quantitative trait loci affecting chemical body composition and deposition as well as feed intake and feed efficiency throughout the entire growth period of pigs

2011 ◽  
Vol 138 (1-3) ◽  
pp. 34-48 ◽  
Author(s):  
C. Duthie ◽  
G. Simm ◽  
A. Doeschl-Wilson ◽  
E. Kalm ◽  
P.W. Knap ◽  
...  
2009 ◽  
Vol 87 (1) ◽  
pp. 37-45 ◽  
Author(s):  
E. L. Sherman ◽  
J. D. Nkrumah ◽  
C. Li ◽  
R. Bartusiak ◽  
B. Murdoch ◽  
...  

2007 ◽  
Vol 85 (12) ◽  
pp. 3170-3181 ◽  
Author(s):  
J. D. Nkrumah ◽  
E. L. Sherman ◽  
C. Li ◽  
E. Marques ◽  
D. H. Crews ◽  
...  

2009 ◽  
Vol 2009 ◽  
pp. 39-39
Author(s):  
C-A Duthie ◽  
G Simm ◽  
A Doeschl-Wilson ◽  
E Kalm ◽  
P Knap ◽  
...  

Most quantitative trait loci (QTL) studies have focussed on the identification of individual QTL effects (additive, dominance and imprinting) in the absence of interactions (epistasis). There are numerous reports in the literature for QTL associated with growth and body composition of pigs, however much less effort has focussed around the identification of epistatic QTL for these traits. Growth and body composition of pigs are probably influenced by numerous QTL located throughout the genome as well as interactions between QTL. Therefore the objective of this study was to investigate the contribution of epistasis to the genomic regulation of growth and body composition of pigs.


2009 ◽  
Vol 40 (6) ◽  
pp. 986-988 ◽  
Author(s):  
G. C. Márquez ◽  
R. M. Enns ◽  
M. D. Grosz ◽  
L. J. Alexander ◽  
M. D. MacNeil

2014 ◽  
Author(s):  
Larry Leamy ◽  
Kari Elo ◽  
Merlyn K Nielsen ◽  
Stephanie Thorn ◽  
William Valdar ◽  
...  

Obesity in human populations, currently a serious health concern, is considered to be the consequence of an energy imbalance in which more energy in calories is consumed than is expended. We used interval mapping techniques to investigate the genetic basis of a number of energy balance traits in an F11 advanced intercross population of mice created from an original intercross of lines selected for increased and decreased heat loss. We uncovered a total of 137 quantitative trait loci (QTLs) for these traits at 41 unique sites on 18 of the 20 chromosomes in the mouse genome, with X-linked QTLs being most prevalent. Two QTLs were found for the selection target of heat loss, one on distal chromosome 1 and another on proximal chromosome 2. The number of QTLs affecting the various traits generally was consistent with previous estimates of heritabilities in the same population, with the most found for two bone mineral traits and the least for feed intake and several body composition traits. QTLs were generally additive in their effects, and some, especially those affecting the body weight traits, were sex-specific. Pleiotropy was extensive within trait groups (body weights, adiposity and organ weight traits, bone traits) and especially between body composition traits adjusted and not adjusted for body weight at sacrifice. Nine QTLs were found for one or more of the adiposity traits, five of which appeared to be unique. The confidence intervals among all QTLs averaged 13.3 Mb, much smaller than usually observed in an F2 cross, and in some cases this allowed us to make reasonable inferences about candidate genes underlying these QTLs. This study combined QTL mapping with genetic parameter analysis in a large segregating population, and has advanced our understanding of the genetic architecture of complex traits related to obesity.


2014 ◽  
Author(s):  
Larry Leamy ◽  
Kari Elo ◽  
Merlyn K Nielsen ◽  
Stephanie Thorn ◽  
William Valdar ◽  
...  

Obesity in human populations, currently a serious health concern, is considered to be the consequence of an energy imbalance in which more energy in calories is consumed than is expended. We used interval mapping techniques to investigate the genetic basis of a number of energy balance traits in an F11 advanced intercross population of mice created from an original intercross of lines selected for increased and decreased heat loss. We uncovered a total of 137 quantitative trait loci (QTLs) for these traits at 41 unique sites on 18 of the 20 chromosomes in the mouse genome, with X-linked QTLs being most prevalent. Two QTLs were found for the selection target of heat loss, one on distal chromosome 1 and another on proximal chromosome 2. The number of QTLs affecting the various traits generally was consistent with previous estimates of heritabilities in the same population, with the most found for two bone mineral traits and the least for feed intake and several body composition traits. QTLs were generally additive in their effects, and some, especially those affecting the body weight traits, were sex-specific. Pleiotropy was extensive within trait groups (body weights, adiposity and organ weight traits, bone traits) and especially between body composition traits adjusted and not adjusted for body weight at sacrifice. Nine QTLs were found for one or more of the adiposity traits, five of which appeared to be unique. The confidence intervals among all QTLs averaged 13.3 Mb, much smaller than usually observed in an F2 cross, and in some cases this allowed us to make reasonable inferences about candidate genes underlying these QTLs. This study combined QTL mapping with genetic parameter analysis in a large segregating population, and has advanced our understanding of the genetic architecture of complex traits related to obesity.


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