Structure of microbial communities and hydrocarbon-dependent sulfate reduction in the anoxic layer of a polluted microbial mat

2011 ◽  
Vol 62 (3) ◽  
pp. 539-546 ◽  
Author(s):  
Raeid M.M. Abed ◽  
Niculina Musat ◽  
Florin Musat ◽  
Marc Mußmann
mSystems ◽  
2019 ◽  
Vol 4 (1) ◽  
Author(s):  
Adrien Vigneron ◽  
Eric B. Alsop ◽  
Perrine Cruaud ◽  
Gwenaelle Philibert ◽  
Benjamin King ◽  
...  

ABSTRACTGulf of Mexico sediments harbor numerous hydrocarbon seeps associated with high sedimentation rates and thermal maturation of organic matter. These ecosystems host abundant and diverse microbial communities that directly or indirectly metabolize components of the emitted fluid. To investigate microbial function and activities in these ecosystems, metabolic potential (metagenomic) and gene expression (metatranscriptomic) analyses of two cold seep areas of the Gulf of Mexico were carried out. Seeps emitting biogenic methane harbored microbial communities dominated by archaeal anaerobic methane oxidizers of phylogenetic group 1 (ANME-1), whereas seeps producing fluids containing a complex mixture of thermogenic hydrocarbons were dominated by ANME-2 lineages. Metatranscriptome measurements in both communities indicated high levels of expression of genes for methane metabolism despite their distinct microbial communities and hydrocarbon composition. In contrast, the transcription level of sulfur cycle genes was quite different. In the thermogenic seep community, high levels of transcripts indicative of syntrophic anaerobic oxidation of methane (AOM) coupled to sulfate reduction were detected. This syntrophic partnership between the dominant ANME-2 and sulfate reducers potentially involves direct electron transfer through multiheme cytochromes. In the biogenic methane seep, genes from an ANME-1 lineage that are potentially involved in polysulfide reduction were highly expressed, suggesting a novel bacterium-independent anaerobic methane oxidation pathway coupled to polysulfide reduction. The observed divergence in AOM activities provides a new model for bacterium-independent AOM and emphasizes the variation that exists in AOM pathways between different ANME lineages.IMPORTANCECold seep sediments are complex and widespread marine ecosystems emitting large amounts of methane, a potent greenhouse gas, and other hydrocarbons. Within these sediments, microbial communities play crucial roles in production and degradation of hydrocarbons, modulating oil and gas emissions to seawater. Despite this ecological importance, our understanding of microbial functions and methane oxidation pathways in cold seep ecosystems is poor. Based on gene expression profiling of environmental seep sediment samples, the present work showed that (i) the composition of the emitted fluids shapes the microbial community in general and the anaerobic methanotroph community specifically and (ii) AOM by ANME-2 in this seep may be coupled to sulfate reduction byDeltaproteobacteriaby electron transfer through multiheme cytochromes, whereas AOM by ANME-1 lineages in this seep may involve a different, bacterium-independent pathway, coupling methane oxidation to elemental sulfur/polysulfide reduction.


1992 ◽  
Vol 9 (4) ◽  
pp. 283-294 ◽  
Author(s):  
Pieter T. Visscher ◽  
Rudolf A. Prins ◽  
Hans Gemerden

2017 ◽  
Vol 262 ◽  
pp. 638-642
Author(s):  
Tomas Hessler ◽  
Tynan Marais ◽  
Robert J. Huddy ◽  
Robert van Hille ◽  
Susan T.L. Harrison

Biological sulfate reduction represents an alternative and sustainable option to reduce the high sulfate load, precipitate heavy metals and neutralise the acidity associated with acid rock drainage (ARD). Sulfate-reducing enrichment cultures have been developed on simple and complex electron donors from several environmental samples and used to inoculate three reactor configurations, namely a continuous stirred tank bioreactor, up-flow anaerobic packed bed reactor and a linear flow channel reactor, with varying degrees of biomass retention provided by carbon microfibres and polyurethane foam. These matrices are included to enhance microbial attachment and colonisation, allowing for the decoupling of hydraulic retention time and biomass retention time. The bioreactor systems are operated under increasingly stringent conditions through the reduction in the hydraulic residence time. The biological sulfate reduction performance and the biomass concentration of planktonic, matrix-attached and matrix-associated communities are routinely monitored. This investigation makes use of biomass quantification of the planktonic community and, following detachment, the matrix-associated community to investigate the resultant microbial communities in these reactor systems. Evaluation of these mixed microbial communities, and their link to process performance, provides an opportunity to impact the design and operation of pilot- and industrial-scale bioprocesses.


2014 ◽  
Vol 5 ◽  
Author(s):  
Jerome T. Babauta ◽  
Erhan Atci ◽  
Phuc T. Ha ◽  
Stephen R. Lindemann ◽  
Timothy Ewing ◽  
...  

2017 ◽  
Vol 83 (8) ◽  
Author(s):  
Xinwei Mao ◽  
Alexandra Polasko ◽  
Lisa Alvarez-Cohen

ABSTRACT In order to elucidate interactions between sulfate reduction and dechlorination, we systematically evaluated the effects of different concentrations of sulfate and sulfide on reductive dechlorination by isolates, constructed consortia, and enrichments containing Dehalococcoides sp. Sulfate (up to 5 mM) did not inhibit the growth or metabolism of pure cultures of the dechlorinator Dehalococcoides mccartyi 195, the sulfate reducer Desulfovibrio vulgaris Hildenborough, or the syntroph Syntrophomonas wolfei. In contrast, sulfide at 5 mM exhibited inhibitory effects on growth of the sulfate reducer and the syntroph, as well as on both dechlorination and growth rates of D. mccartyi. Transcriptomic analysis of D. mccartyi 195 revealed that genes encoding ATP synthase, biosynthesis, and Hym hydrogenase were downregulated during sulfide inhibition, whereas genes encoding metal-containing enzymes involved in energy metabolism were upregulated even though the activity of those enzymes (hydrogenases) was inhibited. When the electron acceptor (trichloroethene) was limiting and an electron donor (lactate) was provided in excess to cocultures and enrichments, high sulfate concentrations (5 mM) inhibited reductive dechlorination due to the toxicity of generated sulfide. The initial cell ratio of sulfate reducers to D. mccartyi (1:3, 1:1, or 3:1) did not affect the dechlorination performance in the presence of sulfate (2 and 5 mM). In contrast, under electron donor limitation, dechlorination was not affected by sulfate amendments due to low sulfide production, demonstrating that D. mccartyi can function effectively in anaerobic microbial communities containing moderate sulfate concentrations (5 mM), likely due to its ability to outcompete other hydrogen-consuming bacteria and archaea. IMPORTANCE Sulfate is common in subsurface environments and has been reported as a cocontaminant with chlorinated solvents at various concentrations. Inconsistent results for the effects of sulfate inhibition on the performance of dechlorination enrichment cultures have been reported in the literature. These inconsistent findings make it difficult to understand potential mechanisms of sulfate inhibition and complicate the interpretation of bioremediation field data. In order to elucidate interactions between sulfate reduction and reductive dechlorination, this study systematically evaluated the effects of different concentrations of sulfate and sulfide on reductive dechlorination by isolates, constructed consortia, and enrichments containing Dehalococcoides sp. This study provides a more fundamental understanding of the competition mechanisms between reductive dechlorination by Dehalococcoides mccartyi and sulfate reduction during the bioremediation process. It also provides insights on the significance of sulfate concentrations on reductive dechlorination under electron donor/acceptor-limiting conditions during in situ bioremediation applications. For example, at a trichloroethene-contaminated site with a high sulfate concentration, proper slow-releasing electron donors can be selected to generate an electron donor-limiting environment that favors reductive dechlorination and minimizes the sulfide inhibition effect.


2021 ◽  
Author(s):  
Lili Shen ◽  
Tao Huang ◽  
Yuanqing Chen ◽  
Zhuding Chu ◽  
Zhouqing Xie

Abstract Microbial communities, sulfur isotope of sulfides (δ34SAVS and δ34SCRS) and sulfur and oxygen isotopes of sulfate (δ34SSO4 and δ18OSO4) in sediments were analyzed to study the biotransformation of sulfur in a penguin-affected lake Y2 and a pristine YO from Fildes Peninsula, Antarctic Peninsula. The microbial communities in Y2 were mainly associated with penguin activities, while those in YO were limited by nutrients. The much enriched δ34SSO4 recorded at depth of 30, 41 and 52 cm in Y2 indicates very strong sulfate reduction therein. The sulfur-degrading bacteria Pseudomonas in 0–23 cm of Y2 was 3.5 times as abundant as that of sulfur oxidizing bacteria (SOB), indicating remarkable remineralization of organic sulfur. While abundant SOB and 34S-depleted sulfate indicate considerable sulfur oxidation in 34–56 cm layer in Y2. In YO sediments, the highest abundance of Desulfotalea and the most enriched δ34SSO4 (35.2‰) and δ34SCRS (2.5‰) indicate strongest sulfate reduction in 28 cm layer. High abundance of Pseudomonas indicates active remineralization of organic sulfur in 3–5 cm layer in YO. While the medium δ34SSO4 and considerable abundance of SOB and SRB indicate concurrence of sulfur oxidation and sulfate reduction in other layers in YO. Our results show that high level of organic matter inputs from penguin populations support the diverse microbial community and biotransformation of sulfur in freshwater ecosystems in Antarctica.


2020 ◽  
Vol 22 (3) ◽  
pp. 740-750 ◽  
Author(s):  
Alexandra Murray ◽  
Julien Maillard ◽  
Massimo Rolle ◽  
Mette Broholm ◽  
Christof Holliger

Process understanding of microbial communities containing organohalide-respiring bacteria (OHRB) is important for effective bioremediation of chlorinated ethenes.


1992 ◽  
Vol 86 (4) ◽  
pp. 283-294 ◽  
Author(s):  
Pieter T. Visscher ◽  
Rudolf A. Prins ◽  
Hans Gemerden

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