The effect of motion correction interpolation on quantitative T1 mapping with MRI

2019 ◽  
Vol 52 ◽  
pp. 119-127 ◽  
Author(s):  
Amitay Nachmani ◽  
Roey Schurr ◽  
Leo Joskowicz ◽  
Aviv A. Mezer
Keyword(s):  
2011 ◽  
Vol 67 (6) ◽  
pp. 1644-1655 ◽  
Author(s):  
Hui Xue ◽  
Saurabh Shah ◽  
Andreas Greiser ◽  
Christoph Guetter ◽  
Arne Littmann ◽  
...  

Author(s):  
Sébastien Roujol ◽  
Murilo Foppa ◽  
Keigo Kawaji ◽  
Kraig V Kissinger ◽  
Beth Goddu ◽  
...  
Keyword(s):  

2012 ◽  
Vol 67 (6) ◽  
pp. spcone-spcone ◽  
Author(s):  
Hui Xue ◽  
Saurabh Shah ◽  
Andreas Greiser ◽  
Christoph Guetter ◽  
Arne Littmann ◽  
...  

Author(s):  
Dar Arava ◽  
Mohammad Masarwy ◽  
Samah Khawaled ◽  
Moti Freiman

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Gaspar Delso ◽  
Laura Farré ◽  
José T. Ortiz-Pérez ◽  
Susanna Prat ◽  
Adelina Doltra ◽  
...  

AbstractMyocardial tissue T1 constitutes a reliable indicator of several heart diseases related to extracellular changes (e.g. edema, fibrosis) as well as fat, iron and amyloid content. Magnetic resonance (MR) T1-mapping is typically achieved by pixel-wise exponential fitting of a series of inversion or saturation recovery measurements. Good anatomical alignment between these measurements is essential for accurate T1 estimation. Motion correction is recommended to improve alignment. However, in the case of inversion recovery sequences, this correction is compromised by the intrinsic contrast variation between frames. A model-based, non-rigid motion correction method for MOLLI series was implemented and validated on a large database of cardiac clinical cases (n = 186). The method relies on a dedicated similarity metric that accounts for the intensity changes caused by T1 magnetization relaxation. The results were compared to uncorrected series and to the standard motion correction included in the scanner. To automate the quantitative analysis of results, a custom data alignment metric was defined. Qualitative evaluation was performed on a subset of cases to confirm the validity of the new metric. Motion correction caused noticeable (i.e. > 5%) performance degradation in 12% of cases with the standard method, compared to 0.3% with the new dedicated method. The average alignment quality was 85% ± 9% with the default correction and 90% ± 7% with the new method. The results of the qualitative evaluation were found to correlate with the quantitative metric. In conclusion, a dedicated motion correction method for T1 mapping MOLLI series has been evaluated on a large database of clinical cardiac MR cases, confirming its increased robustness with respect to the standard method implemented in the scanner.


Circulation ◽  
2014 ◽  
Vol 130 (suppl_2) ◽  
Author(s):  
Keigo Kawaji ◽  
Marco Marino ◽  
Akiko Tanaka ◽  
Giacomo Tarroni ◽  
Takeyoshi Ota ◽  
...  

Introduction: Quantitative myocardial T1 mapping is increasingly being used to measure myocardial fibrosis, but this approach requires effective breath-holds during MRI. Respiratory artifacts from poor breath-holds result in motion-corrupted pixels and measurement error. We developed and tested the feasibility of an approach that applies motion correction (MC) followed by semi-automated segmentation to obtain motion-free T1 maps of the LV. Methods: Modified Look-Locker Inversion Recovery (MOLLI) data was acquired on 1.5T MRI scanner, where the endo- and epicardial borders were semi-automatically detected using noise characteristics of myocardial tissue [1,2] and followed by fully automated partitioning into AHA-defined segments [1]. Affine motion correction was then applied to each segment to generate MC-T1 maps of the heart. This approach was tested on 24 slices (12 before contrast injection [PRE]; 12 post [POST], 96x2 ROI segments) from 4 swine with no LV abnormality. The same segmented ROIs on T1 maps without MC were also assessed for comparison. Results: The standard deviation of T1 within each ROI became significantly lower after MC: [MC vs non-MC: 94 ± 37 vs 114 ± 51 ms (PRE, p<0.00005); 66 ± 51 vs 89 ± 67 ms (POST, p<0.0005)], suggesting less motion blurring and possibly less error in T1 measurements within each generated ROI (fig). Significant changes were observed in POST T1 values (446 ± 66 vs 435 ± 89ms; p < 0.0005), yielding an average increase of 2.6 ± 1.6% per segment. The inferior (+3.9%) and inferiolateral segments (+4.5%) yielded the most change, corresponding to regions with most motion across MOLLI images as assessed visually. PRE T1 changes were also significant (998 ± 94 vs 1008 ± 114 ms; p < 0.05). Conclusions: Our new semi-automated and motion-corrected T1 map assessment shows promise to improve the accuracy of T1 measurements but needs further validation in a larger dataset. This technique may become useful for objective evaluation of myocardial fibrosis.


2021 ◽  
Vol 8 ◽  
Author(s):  
Ricardo A. Gonzales ◽  
Qiang Zhang ◽  
Bartłomiej W. Papież ◽  
Konrad Werys ◽  
Elena Lukaschuk ◽  
...  

Background: Quantitative cardiovascular magnetic resonance (CMR) T1 mapping has shown promise for advanced tissue characterisation in routine clinical practise. However, T1 mapping is prone to motion artefacts, which affects its robustness and clinical interpretation. Current methods for motion correction on T1 mapping are model-driven with no guarantee on generalisability, limiting its widespread use. In contrast, emerging data-driven deep learning approaches have shown good performance in general image registration tasks. We propose MOCOnet, a convolutional neural network solution, for generalisable motion artefact correction in T1 maps.Methods: The network architecture employs U-Net for producing distance vector fields and utilises warping layers to apply deformation to the feature maps in a coarse-to-fine manner. Using the UK Biobank imaging dataset scanned at 1.5T, MOCOnet was trained on 1,536 mid-ventricular T1 maps (acquired using the ShMOLLI method) with motion artefacts, generated by a customised deformation procedure, and tested on a different set of 200 samples with a diverse range of motion. MOCOnet was compared to a well-validated baseline multi-modal image registration method. Motion reduction was visually assessed by 3 human experts, with motion scores ranging from 0% (strictly no motion) to 100% (very severe motion).Results: MOCOnet achieved fast image registration (&lt;1 second per T1 map) and successfully suppressed a wide range of motion artefacts. MOCOnet significantly reduced motion scores from 37.1±21.5 to 13.3±10.5 (p &lt; 0.001), whereas the baseline method reduced it to 15.8±15.6 (p &lt; 0.001). MOCOnet was significantly better than the baseline method in suppressing motion artefacts and more consistently (p = 0.007).Conclusion: MOCOnet demonstrated significantly better motion correction performance compared to a traditional image registration approach. Salvaging data affected by motion with robustness and in a time-efficient manner may enable better image quality and reliable images for immediate clinical interpretation.


2021 ◽  
Vol 22 (Supplement_1) ◽  
Author(s):  
G Delso ◽  
JT Ortiz-Perez ◽  
S Prat ◽  
A Doltra ◽  
RJ Perea ◽  
...  

Abstract Funding Acknowledgements Type of funding sources: None. Introduction Myocardial T1 mapping constitutes a reliable indicator of heart diseases related to changes of myocardial extracellular content (e.g. oedema, fibrosis) as well as fat, iron and amyloid content. T1-mapping techniques rely on fitting a model to a series of MRI measurements. Alignment between these measurements is required for accurate T1 estimation. This is limited by triggering accuracy and patient motion. Image registration is often applied to improve the alignment. In the case of MOLLI series, registration is compromised by contrast variation between the images. We present the validation of a new registration method, designed to account for the contrast properties of MOLLI data. Methods A cohort of 186 patients referred for a CMR was included in this study (115 M / 71 F; weight 75 ± 15 Kg; age 55 ± 16). Scans on a 3.0T MR included a MOLLI sequence with target parameters: 2D bSSFP, 160x148, pFOV 0.8-1.0, 1.4x1.4mm², ST 8mm, TE 1.4ms, TR 3.0ms, FA 35deg, NEX 1, BW 100kHz, 2x ASSET, 5(3)3. Cartesian 2D reconstruction followed by motion correction was applied retrospectively. A new correction algorithm was implemented, based on a similarity criterion that accounted for T1 relaxation: It consisted of an iterative approach alternating polarity estimation, T1 fitting, relaxation simulation and frame registration. The coefficient of determination (R²) was used as a quality measure. A representative subset of the results was reviewed by two experienced cardiologists. Results All reconstructions (totalling 1133 2D MOLLI series) yielded qualitatively correct T1 maps. Results with the new method were compared to conventional motion correction and no correction. The number of pixels with R²&gt;0.95 was 85%±9% with standard motion correction and 90%±7% with the new dedicated method. In terms of improvement w.r.t. uncorrected data, the standard method yielded +3%±8% and the new one +9%±8%. Motion correction caused noticeable performance degradation in 12% of cases with the standard method, compared to 0.2% with the proposed method. The relative performance of the different methods can be appreciated in Figure 3. Discussion Despite T1 mapping techniques constituting a reliable diagnostic tool in cardiac imaging, they remain sensitive to patient motion and triggering inaccuracies, making them vulnerable to arrhythmia episodes. Improving the similarity criterion by accounting for T1 relaxation significantly decreased the incidence of misregistration and subsequent T1 inaccuracies. Using the R² of the voxel-wise T1 fit as a surrogate of alignment allowed to confirm the increased robustness of the new, dedicated motion correction method for MOLLI series. Conclusion We have demonstrated a new reconstruction pipeline with built-in registration, optimized for MOLLI T1-mapping. Using a large database of clinical data, the new method has been shown to improve the robustness to motion of cardiac T1 mapping. Abstract Figure.


2005 ◽  
Vol 25 (1_suppl) ◽  
pp. S622-S622
Author(s):  
Hans R Herzog ◽  
Lutz Tellmann ◽  
Roger Fulton ◽  
Isabelle Stangier ◽  
Elena Rota Kops ◽  
...  
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