CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis

2021 ◽  
Author(s):  
Yifeng Hou ◽  
Jing Sun ◽  
Baixing Wu ◽  
Yangyang Gao ◽  
Hongbo Nie ◽  
...  
2008 ◽  
Vol 134 (3) ◽  
pp. 534-546 ◽  
Author(s):  
Christian Chervin ◽  
Arak Tira-umphon ◽  
Nancy Terrier ◽  
Mohamed Zouine ◽  
Dany Severac ◽  
...  

2004 ◽  
Vol 11 (3) ◽  
pp. 408-417 ◽  
Author(s):  
Yi-Chao Hsu ◽  
Yung-Tsung Chiu ◽  
Chang-Yin Lee ◽  
Yun-Lian Lin ◽  
Yi-Tsau Huang

2012 ◽  
Vol 40 (14) ◽  
pp. 6821-6833 ◽  
Author(s):  
Judit Ribas ◽  
Xiaohua Ni ◽  
Mark Castanares ◽  
Minzhi M. Liu ◽  
David Esopi ◽  
...  

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Hyeon-Mu Cho ◽  
Se-Hee Choe ◽  
Young-Hyun Kim ◽  
Hye-Ri Park ◽  
Hee-Eun Lee ◽  
...  

AbstractTransposable elements cause alternative splicing (AS) in different ways, contributing to transcript diversification. Alternative polyadenylation (APA), one of the AS events, is related to the generation of mRNA isoforms in 70% of human genes. In this study, we tried to investigate AluYRa1s located at the terminal region of cynomolgus monkey genes, utilizing both computational analysis and molecular experimentation. We found that ten genes had AluYRa1 at their 3′ end, and nine of these AluYRa1s were sense-oriented. Furthermore, in seven genes, AluYRa1s were expected to have a similar consensus sequence for polyadenylation cleavage. Additional computational analysis using the annotation files from the UCSC database showed that AluYRa1 was more involved in polyadenylation than in open reading frame exon splicing. To examine the extent of AluYRa1 involvement in polyadenylation, RNA-seq data from 30 normal cynomolgus monkeys were analyzed using TAPAS, a recently devised software that detects all the promising polyadenylation sites including APA sites. We observed that approximately 74% of possible polyadenylation sites in the analyzed genes were provided by sense-oriented AluYRa1. In conclusion, AluYRa1 is an Old-World monkey-specific TE, and its sense-oriented insertion at the 3′UTR region tends to provide a favorable environment for polyadenylation, diversifying gene transcripts.


Oncogene ◽  
1998 ◽  
Vol 17 (18) ◽  
pp. 2287-2293 ◽  
Author(s):  
Hitoshi Okada ◽  
Toshio Watanabe ◽  
Masaru Niki ◽  
Hiroshi Takano ◽  
Natsuko Chiba ◽  
...  

2018 ◽  
Vol 122 ◽  
pp. 65-77 ◽  
Author(s):  
Sunisa Yoodee ◽  
Yohko Kobayashi ◽  
Wisuwat Songnuan ◽  
Chuenchit Boonchird ◽  
Siripong Thitamadee ◽  
...  

2012 ◽  
Vol 25 (2) ◽  
pp. 241-249 ◽  
Author(s):  
Andreas Theocharis ◽  
Sophie Bordiec ◽  
Olivier Fernandez ◽  
Sandra Paquis ◽  
Sandrine Dhondt-Cordelier ◽  
...  

Several endophytic bacteria reportedly induce resistance to biotic stress and abiotic stress tolerance in several plant species. Burkholderia phytofirmans PsJN is a plant-growth-promoting rhizobacterium (PGPR) that is able to colonize grapevine tissues and induce resistance to gray mold. Further, PsJN induces physiological changes that increase grapevine tolerance to low nonfreezing temperatures. To better understand how bacteria induced the observed phenomena, stress-related gene expression and metabolite accumulation were monitored in 6-week-old Chardonnay grapevine plantlets after exposure to low nonfreezing temperatures. Under normal conditions (26°C), plantlet bacterization had no significant effect on the monitored parameters. By contrast, at 4°C, both stress-related gene transcripts and metabolite levels increased earlier and faster, and reached higher levels in PsJN-bacterized plantlets than in nonbacterized counterparts, in accordance with priming phenomena. The recorded changes may be correlated with the tolerance to cold stress conferred by the presence of PsJN. This is the first time that PGPR-induced priming has been shown to protect plants against low-temperature stress. Moreover, 1 week after cold exposure, levels of stress-related metabolites had declined more in PsJN-bacterized plants, suggesting that the endophyte is involved in the cold acclimation process via the scavenging system.


2007 ◽  
Vol 102 (3) ◽  
pp. 1078-1089 ◽  
Author(s):  
Lisa S. Chow ◽  
Laura J. Greenlund ◽  
Yan W. Asmann ◽  
Kevin R. Short ◽  
Shelly K. McCrady ◽  
...  

We hypothesized that enhanced skeletal muscle mitochondrial function following aerobic exercise training is related to an increase in mitochondrial transcription factors, DNA abundance [mitochondrial DNA (mtDNA)], and mitochondria-related gene transcript levels, as well as spontaneous physical activity (SPA) levels. We report the effects of daily treadmill training on 12-wk-old FVB mice for 5 days/wk over 8 wk at 80% peak O2 consumption and studied the training effect on changes in body composition, glucose tolerance, muscle mtDNA muscle, mitochondria-related gene transcripts, in vitro muscle mitochondrial ATP production capacity (MATPC), and SPA levels. Compared with the untrained mice, the trained mice had higher peak O2 consumption (+18%; P < 0.001), lower percentage of abdominal (−25.4%; P < 0.02) and body fat (−19.5%; P < 0.01), improved glucose tolerance ( P < 0.04), and higher muscle mitochondrial enzyme activity (+19.5–43.8%; P < 0.04) and MATPC (+28.9 to +32.4%; P < 0.01). Gene array analysis showed significant differences in mRNAs of mitochondria-related ontology groups between the trained and untrained mice. Training also increased muscle mtDNA (+88.4 to +110%; P < 0.05), peroxisome proliferative-activated receptor-γ coactivator-1α protein (+99.5%; P < 0.04), and mitochondrial transcription factor A mRNA levels (+21.7%; P < 0.004) levels. SPA levels were higher in trained mice ( P = 0.056, two-sided t-test) and significantly correlated with two separate substrate-based measurements of MATPC ( P < 0.02). In conclusion, aerobic exercise training enhances muscle mitochondrial transcription factors, mtDNA abundance, mitochondria-related gene transcript levels, and mitochondrial function, and this enhancement in mitochondrial function occurs in association with increased SPA.


Sign in / Sign up

Export Citation Format

Share Document