Relevance of weak intermolecular forces on the supramolecular structure of free or DMSO solvated 5-(4-X-benzylidene)rhodanines (X = F, Cl, Br, I)

2016 ◽  
Vol 1120 ◽  
pp. 100-114
Author(s):  
José S. Casas ◽  
M. Victoria Castaño ◽  
María D. Couce ◽  
Agustín Sánchez ◽  
José Sordo ◽  
...  
Author(s):  
Tom McLeish

‘Gelification and soapiness’ looks at the third class of soft matter: ‘self-assembly’. Like the colloids of inks and clays, and the polymers of plastics and rubbers, ‘self-assembled’ soft matter also emerges as a surprising consequence of Brownian motion combined with weak intermolecular forces. Like them, it also leads to explanations of a very rich world of materials and phenomena, such as gels, foams, soaps, and ultimately to many of the structures of biological life. There is an important distinction that needs to be made between one-dimensional and two-dimensional self-assembly.


2018 ◽  
Vol 115 (8) ◽  
pp. 1724-1729 ◽  
Author(s):  
Andrea Zen ◽  
Jan Gerit Brandenburg ◽  
Jiří Klimeš ◽  
Alexandre Tkatchenko ◽  
Dario Alfè ◽  
...  

Computer simulation plays a central role in modern-day materials science. The utility of a given computational approach depends largely on the balance it provides between accuracy and computational cost. Molecular crystals are a class of materials of great technological importance which are challenging for even the most sophisticated ab initio electronic structure theories to accurately describe. This is partly because they are held together by a balance of weak intermolecular forces but also because the primitive cells of molecular crystals are often substantially larger than those of atomic solids. Here, we demonstrate that diffusion quantum Monte Carlo (DMC) delivers subchemical accuracy for a diverse set of molecular crystals at a surprisingly moderate computational cost. As such, we anticipate that DMC can play an important role in understanding and predicting the properties of a large number of molecular crystals, including those built from relatively large molecules which are far beyond reach of other high-accuracy methods.


1974 ◽  
Vol 29 (5) ◽  
pp. 804-809
Author(s):  
P. Kröning

Abstract Pyrene-3-aldehyde, 3-acetylpyrene and 3-benzoylpyrene show almost no fluorescence in dilute solution in non-polar solvents. In more concentrated solutions, however, a long wave fluorescence is observed, showing the existence of weak intermolecular forces, even in the ground state. In polar solvents, pyrene-3-aldehyde and 3-acetylpyrene exhibit short wave monomer fluorescence whilst 3-benzoylpyrene does not fluoresce. The intensity for both long and short wave fluorescence is dependent upon the excitation wave length and is a maximum for excitation in the weak long wave tail of the first absorption band. Molecules are thought to have a greater absorption in this region if they interact strongly with their polar or polarizable surroundings. Due to the very short singlet lifetime of isolated monomers (τ<C10-10 sec), such molecules have a greater probability of forming a fluorescence state than more weakly interacting ones.


2017 ◽  
Vol 70 (5) ◽  
pp. 538 ◽  
Author(s):  
Jiabin Gao ◽  
Djamal Djaidi ◽  
Christopher E. Marjo ◽  
Mohan M. Bhadbhade ◽  
Alison T. Ung ◽  
...  

The poorly soluble racemic compound 6,6a,13,13a-tetrahydropentaleno[1,2-b:4,5-b′]diquinoline (4) has an exceptionally high melting point range of 352–354°C despite its low molar mass (308.38) and a structure containing only 40 atoms (38 of which are C and H). Analysis of the X-ray crystal structure and Hirshfeld surface of 4, along with comparison with its isostructural homologue 2, reveals how this occurs in the absence of Pauling-type hydrogen bonding. Excellent complementarity between homochiral molecules of 4 allows formation of enantiomerically pure layers using C–H⋯π, aromatic π⋯π, and C–H⋯N interactions. The alternating layers of opposite handedness are then crosslinked by means of aza-1,3-peri hydrogen interactions. This bifurcated C–H⋯N⋯H–C motif acts as a molecular clip creating a highly rigid network structure. The role of weaker intermolecular forces in influencing the solubility and bioavailability of potential drug molecules is discussed in the context of the popular Lipinski ‘rule of 5’ guidelines.


2001 ◽  
Vol 57 (3) ◽  
pp. 399-409 ◽  
Author(s):  
Stella Makedonopoulou ◽  
Konstantina Yannakopoulou ◽  
Demetrios Mentzafos ◽  
Victor Lamzin ◽  
Alexander Popov ◽  
...  

The enantiomers of racemic olive fly sex pheromone 1,7-dioxaspiro[5.5]undecane (1) have been isolated by crystallization with enantiospecific cyclodextrin hosts: (S)-(1) crystallizes with heptakis(2,3,6-tri-O-methyl)-β-cyclodextrin (TMβCD) and (R)-(1) with hexakis(2,3,6-tri-O-methyl)-α-cyclodextrin (TMαCD). The crystal structure of TMβCD/(S)-(1) from synchrotron radiation data at 100 K, determined for the first time, proves that TMβCD crystallizes with only the (S)-enantiomer from the racemic mixture. Comparison with the 100 K structure of TMαCD/(R)-(1) redetermined with synchrotron data has provided insight into the interactions between each of the hosts with the corresponding enantiomeric guests. Owing to the high resolution of the data and the unusually high quality of the crystals, localization of the H atoms has been achieved, a rare accomplishment for cyclodextrin X-ray structures. This made possible, apart from the geometry of the complexes, the detailed description of a five-membered-ring water cluster with very well ordered hydrogen bonding. The enantiospecificity exhibited by the described systems reveals the subtle differences of the weak intermolecular forces involved in the selective binding of the two optical antipodes by the two hosts. The binding geometry in the two complexes is different, but it is effected in both by numerous host–guest C—H...O interactions, resulting from induced fit of the hosts toward each of the enantiomeric guests. In TMαCD/(R)-(1) two of these H...O host–guest distances, directed toward the acetal O atoms defining the chirality of the guest, are much shorter than the rest and also shorter than all the H...O distances in TMβCD/(S)-(1). Moreover, (R)-(1) interacts not only with the enclosing host, but with other hosts in the crystal lattice, in contrast to (S)-(1) in the TMβCD/(S)-(1) complex which is isolated inside channels formed by the host molecules. The above differences are reflected in the much higher binding constant of TMαCD/(R)-(1) compared with that of TMβCD/(S)-(1) (∼6800 and ∼935 M−1, respectively), determined by NMR in aqueous solution, and the ability of TMαCD to selectively precipitate (R)-(1) from racemic (1) in much higher yield than TMβCD precipitates (S)-(1).


1999 ◽  
Vol 110 (22) ◽  
pp. 10766-10773 ◽  
Author(s):  
A. R. W. McKellar ◽  
Yunjie Xu ◽  
Wolfgang Jäger ◽  
C. Bissonnette

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