Introduction to machine learning for brain imaging

NeuroImage ◽  
2011 ◽  
Vol 56 (2) ◽  
pp. 387-399 ◽  
Author(s):  
Steven Lemm ◽  
Benjamin Blankertz ◽  
Thorsten Dickhaus ◽  
Klaus-Robert Müller
2018 ◽  
Vol 2 (suppl_1) ◽  
pp. 849-849
Author(s):  
J Kernbach ◽  
L Rogenmoser ◽  
G Schlaug ◽  
C Gaser

2016 ◽  
Vol 17 (S13) ◽  
Author(s):  
Mutlu Mete ◽  
Unal Sakoglu ◽  
Jeffrey S. Spence ◽  
Michael D. Devous ◽  
Thomas S. Harris ◽  
...  

10.5772/8909 ◽  
2010 ◽  
Author(s):  
Maha Khachab ◽  
Chafic Mokbel ◽  
Salim Kaakour ◽  
Nicolas Saliba ◽  
Gerard Chollet

2019 ◽  
Author(s):  
Yafeng Zhan ◽  
Jianze Wei ◽  
Jian Liang ◽  
Xiu Xu ◽  
Ran He ◽  
...  

AbstractPsychiatric disorders often exhibit shared (co-morbid) symptoms, raising controversies over accurate diagnosis and the overlap of their neural underpinnings. Because the complexity of data generated by clinical studies poses a formidable challenge, we have pursued a reductionist framework using brain imaging data of a transgenic primate model of autism spectrum disorder (ASD). Here we report an interpretable cross-species machine learning approach which extracts transgene-related core regions in the monkey brain to construct the classifier for diagnostic classification in humans. The cross-species classifier based on core regions, mainly distributed in frontal and temporal cortex, identified from the transgenic primate model, achieved an accuracy of 82.14% in one clinical ASD cohort obtained from Autism Brain Imaging Data Exchange (ABIDE-I), significantly higher than the human-based classifier (61.31%, p < 0.001), which was validated in another independent ASD cohort obtained from ABIDE-II. Such monkey-based classifier generalized to achieve a better classification in obsessive-compulsive disorder (OCD) cohorts, and enabled parsing of differential connections to right ventrolateral prefrontal cortex being attributable to distinct traits in patients with ASD and OCD. These findings underscore the importance of investigating biologically homogeneous samples, particularly in the absence of real-world data adequate for deconstructing heterogeneity inherited in the clinical cohorts.One Sentence SummaryFeatures learned from transgenic monkeys enable improved diagnosis of autism-related disorders and dissection of their underlying circuits.


2018 ◽  
Author(s):  
Gajendra J. Katuwal ◽  
Stefi A. Baum ◽  
Andrew M. Michael

AbstractA comprehensive investigation of early brain alterations in Autism Spectrum Disorder (ASD) is critical for understanding the neuroanatomical underpinnings of autism and its early diagnosis. Most previous brain imaging studies in ASD, however, are based on children older than 6 years – well after the average age of ASD diagnosis (~46 months). In this study, we use brain magnetic resonance images that were collected as part of clinical routine from patients who were later diagnosed with ASD. Using 15 ASD subjects of age three to four years and 18 age-matched non-ASD subjects as controls, we perform comprehensive comparison of different brain morphometric features and ASD vs. non-ASD classification by Random Forest machine learning method. We find that, although total intracranial volume (TIV) of ASD was 5.5 % larger than in non-ASD, brain volumes of many other brain areas (as a percentage of TIV) were smaller in ASD and can be partly attributed to larger (>10 %) ventricles in ASD. The larger TIV in ASD was correlated to larger surface area and increased amount of cortical folding but not to cortical thickness. The white matter regions in ASD had less image intensity (predominantly in the frontal and temporal regions) suggesting myelination deficit. We achieved 95 % area under the ROC curve (AUC) for ASD vs. non-ASD classification using all brain features. When classification was performed separately for each feature type, image intensity yielded the highest predictive power (95 % AUC), followed by cortical folding index (69 %), cortical and subcortical volume (69 %), and surface area (68 %). The most important feature for classification was white matter intensity surrounding the rostral middle frontal gyrus and was lower in ASD (d = 0.77, p = 0.04). The high degree of classification success indicates that the application of machine learning methods on brain features holds promise for earlier identification of ASD. To our knowledge this is the first study to leverage a clinical imaging archive to investigate early brain markers in ASD.


2019 ◽  
Author(s):  
Ann-Marie G. de Lange ◽  
Tobias kaufmann ◽  
Dennis van der Meer ◽  
Luigi Maglanoc ◽  
Dag Alnæs ◽  
...  

AbstractPregnancy and childbirth involve maternal brain adaptations that promote attachment to and protection of the newborn. Using brain imaging and machine learning, we provide evidence for a positive relationship between number of childbirths and a ‘younger-looking’ brain in 12,021 women, which could not be explained by common genetic variation. The findings demonstrate that parity can be linked to brain health later in life.


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