Transcriptomic analysis of Allium sativum uncovers putative genes involved in photoperiodic pathway and hormone signaling under long day and short day conditions

Plant Science ◽  
2021 ◽  
pp. 111095
Author(s):  
Muhammad Jawaad Atif ◽  
Bakht Amin ◽  
Muhammad Imran Ghani ◽  
Muhammad Ali ◽  
Somia Khursheed ◽  
...  
Keyword(s):  
Allium Sativum ◽  
Transcriptomic Analysis ◽  
Hormone Signaling ◽  
Short Day ◽  
Long Day

scholarly journals Transcriptomic analysis of flower induction for long-day pitaya by supplementary lighting in short-day winter season

2020 ◽  
Author(s):  
Rui Xiong ◽  
Chengli Liu ◽  
Min Xu ◽  
Shuang-Shuang Wei ◽  
Jia-quan Huang ◽  
...  
Keyword(s):  
Time Course ◽  
Floral Induction ◽  
Winter Season ◽  
Transcriptomic Analysis ◽  
Flower Induction ◽  
Pcr Analysis ◽  
Tropical Fruit ◽  
Short Day ◽  
Long Day ◽  
Supplementary Lighting

Abstract Background: Pitayas are currently attracting considerable interest as a tropical fruit with numerous health benefits. However, as a long-day plant, pitaya plants cannot flower in the winter season from November to April in Hainan, China. To harvest pitayas with high economic value in the winter season, it is necessary to provide supplementary lighting at night to induce flowering. To further explore the molecular regulating mechanisms of flower induction in pitaya plants exposed to supplementary lighting, we used de novo RNA sequencing-based transcriptomic analysis for four stages of pitaya plants subjected to light induction. Results: We assembled 68113 unigenes in total, comprising 29782 unigenes with functional annotations in the NR database, 20716 annotations in SwissProt, 18088 annotations in KOG, and 11059 annotations in KEGG. Comparisons between different samples revealed different numbers of significantly differentially expressed genes (DEGs). A number of DEGs involved in energy metabolism-related processes and plant hormone signaling were detected. Moreover, we identified many CONSTANS-LIKE, FLOWERING LOCUS T, and other DEGs involved in the direct regulation of flowering including CDF and TCP, which function as typical transcription factor genes in the flowering process. At the transcriptomic level, we verified 13 DEGs with different functions in the time-course response to light-induced flowering by quantitative reverse-transcription PCR analysis. Conclusions: The identified DEGs may include some key genes controlling the pitaya floral-induction network, the flower induction and development is very complicated, and it involves photoperiod perception and different phytohormone signaling. These findings will increase our understanding to the molecular mechanism of floral regulation of long-day pitaya plants in short-day winter season induced by supplementary lighting.

scholarly journals Transcriptomic analysis of flower induction for long-day pitaya by supplementary lighting in short-day winter season

2019 ◽  
Author(s):  
Rui Xiong ◽  
Chengli Liu ◽  
Min Xu ◽  
Shuang-Shuang Wei ◽  
Jia-quan Huang ◽  
...  
Keyword(s):  
Time Course ◽  
Floral Induction ◽  
Winter Season ◽  
Transcriptomic Analysis ◽  
Flower Induction ◽  
Pcr Analysis ◽  
Tropical Fruit ◽  
Short Day ◽  
Long Day ◽  
Supplementary Lighting

Abstract Background: Pitayas are currently attracting considerable interest as a tropical fruit with numerous health benefits. However, as a long-day plant, pitaya plants cannot flower in the winter season from November to April in Hainan, China. To harvest pitayas with high economic value in the winter season, it is necessary to provide supplementary lighting at night to induce flowering. To further explore the molecular regulating mechanisms of flower induction in pitaya plants exposed to supplementary lighting, we used de novo RNA sequencing-based transcriptomic analysis for four stages of pitaya plants subjected to light induction. Results: We assembled 68113 unigenes in total, comprising 29782 unigenes with functional annotations in the NR database, 20716 annotations in SwissProt, 18088 annotations in KOG, and 11059 annotations in KEGG. Comparisons between different samples revealed different numbers of significantly differentially expressed genes (DEGs). A number of DEGs involved in energy metabolism-related processes and plant hormone signaling were detected. Moreover, we identified many CONSTANS-LIKE, FLOWERING LOCUS T, and other DEGs involved in the direct regulation of flowering including CDF and TCP, which function as typical transcription factor genes in the flowering process. At the transcriptomic level, we verified 13 DEGs with different functions in the time-course response to light-induced flowering by quantitative reverse-transcription PCR analysis. Conclusions: The identified DEGs may include some key genes controlling the pitaya floral-induction network, the flower induction and development is very complicated, and it involves photoperiod perception and different phytohormone signaling. These findings will increase our understanding to the molecular mechanism of floral regulation of long-day pitaya plants in short-day winter season induced by supplementary lighting.

scholarly journals Transcriptomic analysis of flower induction for long-day pitaya by supplementary lighting in short-day winter season

2020 ◽  
Author(s):  
Rui Xiong ◽  
Chengli Liu ◽  
Min Xu ◽  
Shuang-Shuang Wei ◽  
Jia-quan Huang ◽  
...  
Keyword(s):  
Time Course ◽  
Floral Induction ◽  
Winter Season ◽  
Transcriptomic Analysis ◽  
Flower Induction ◽  
Pcr Analysis ◽  
Tropical Fruit ◽  
Short Day ◽  
Long Day ◽  
Supplementary Lighting

Abstract Background: Pitayas are currently attracting considerable interest as a tropical fruit with numerous health benefits. However, as a long-day plant, pitaya plants cannot flower in the winter season from November to April in Hainan, China. To harvest pitayas with high economic value in the winter season, it is necessary to provide supplementary lighting at night to induce flowering. To further explore the molecular regulating mechanisms of flower induction in pitaya plants exposed to supplementary lighting, we used de novo RNA sequencing-based transcriptomic analysis for four stages of pitaya plants subjected to light induction. Results: We assembled 68113 unigenes in total, comprising 29782 unigenes with functional annotations in the NR database, 20716 annotations in SwissProt, 18088 annotations in KOG, and 11059 annotations in KEGG. Comparisons between different samples revealed different numbers of significantly differentially expressed genes (DEGs). A number of DEGs involved in energy metabolism-related processes and plant hormone signaling were detected. Moreover, we identified many CONSTANS-LIKE , FLOWERING LOCUS T , and other DEGs involved in the direct regulation of flowering including CDF and TCP , which function as typical transcription factor genes in the flowering process. At the transcriptomic level, we verified 13 DEGs with different functions in the time-course response to light-induced flowering by quantitative reverse-transcription PCR analysis. Conclusions: The identified DEGs may include some key genes controlling the pitaya floral-induction network, the flower induction and development is very complicated, and it involves photoperiod perception and different phytohormone signaling. These findings will increase our understanding to the molecular mechanism of floral regulation of long-day pitaya plants in short-day winter season induced by supplementary lighting.

scholarly journals Transcriptomic analysis of flower induction for long-day pitaya by supplementary lighting in short-day winter season

BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Rui Xiong ◽  
Chengli Liu ◽  
Min Xu ◽  
Shuang-shuang Wei ◽  
Jia-quan Huang ◽  
...  
Keyword(s):  
Winter Season ◽  
Transcriptomic Analysis ◽  
Flower Induction ◽  
Short Day ◽  
Long Day ◽  
Supplementary Lighting

Control of torpor and body weight patterns by a seasonal timer in Siberian hamsters

1989 ◽  
Vol 257 (1) ◽  
pp. R142-R149 ◽  
Author(s):  
T. J. Bartness ◽  
J. A. Elliott ◽  
B. D. Goldman
Keyword(s):  
Body Weight ◽  
Food Intake ◽  
Implant Removal ◽  
Daily Torpor ◽  
Short Day ◽  
Siberian Hamsters ◽  
Long Day ◽  
Preparatory Phase ◽  
Pelage Color ◽  
Seasonal Responses

Two experiments were designed to assess whether the short-day-induced patterns of shallow daily torpor, body weight, and other seasonal responses (food intake and pelage pigmentation) exhibited by Siberian hamsters (Phodopus sungorus sungorus) are under the control of a "seasonal timekeeping mechanism" that is independent of reproductive status [testosterone, (T)]. We examined whether the patterning and expression of these seasonal responses were altered by decreases in serum T that accompany gonadal regression during the first 8 wk of short-day exposure (i.e., the "preparatory phase" of the torpor season) or by experimental increases in serum T after this phase. Short-day-housed, castrated hamsters bearing T implants had long-day levels of the hormone and did not exhibit torpor. Appropriate seasonal patterns and levels of torpor, body weight, pelage color stage, and food intake were exhibited after T implant removal although serum T was clamped to long-day levels during the preparatory phase. In animals that were gonad intact during the preparatory phase and were subsequently castrated and given T implants, torpor did not occur as long as the implants were in place. However, the patterns and levels of daily torpor, food intake, and body weight rapidly returned to appropriate seasonal values compared with the castrated, blank-implanted controls on T implant removal; these effects occurred whether the T implants were removed when torpor frequency was increasing, at its peak, or decreasing across the torpor season. T did not affect pelage color stage under any condition.(ABSTRACT TRUNCATED AT 250 WORDS)

Cessation of Long Day Melatonin Rhythms Time Puberty in a Short Day Breeder*

Endocrinology ◽  
1988 ◽  
Vol 123 (3) ◽  
pp. 1636-1641 ◽  
Author(s):  
DOUGLAS L. FOSTER ◽  
FRANCIS J. P. EBLING ◽  
LEE E. CLAYPOOL ◽  
CELIA J. I. WOODFILL
Keyword(s):  
Short Day ◽  
Long Day

scholarly journals Agronomic Performance and Flowering Behavior in Response to Photoperiod and Vernalization in Barley (Hordeum vulgare L.) Genotypes with Contrasting Drought Tolerance Behavior

2021 ◽  
Author(s):  
Jamal Abu-Elenein ◽  
Rabea Al-Sayaydeh ◽  
Zahera Akkeh ◽  
Zakaria Al-Ajlouni ◽  
AbdRaheem A. Al-Bawalize ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Shoot Apical Meristem ◽  
Apical Meristem ◽  
Agronomic Performance ◽  
Short Day ◽  
Drought Tolerant ◽  
Long Day ◽  
Meristem Development ◽  
Rainfed Conditions ◽  
Barley Genotypes

Abstract Background In barley, flowering behavior is a highly regulated and complex process where the appropriate matching of reproductive development with seasonal variation in water availability confer barley adaptation to different environments. In this study, the role of variation in flowering time and drought tolerance in four selected barley genotypes was studied under field and controlled conditions. For this purpose, field trials were conducted for two consecutive seasons at three diverse environments where the studied genotypes were subjected to either rainfed conditions or rainfed plus supplementary irrigation under two different sowing dates. Furthermore, reproductive meristem development in two selected barley genotypes, Rum (drought tolerant) and Steptoe (drought-sensitive) was also assessed in response to both vernalization and water stress under two different photoperiod conditions.Results Variation in the number of days to heading was more pronounced under rainfed conditions than under well water conditions. For agronomic performance, Rum was superior under all tested environments, which assure its general adaptability to multiple environments, while Steptoe was the poorest. The transition to reproductive meristem was faster under vernalized long-day conditions as compared to vernalized short-day conditions. The progress of shoot apical meristem development and heading under long-day conditions was significantly faster in Rum than that of Steptoe. A clear effect of drought stress was observed on shoot apical meristem development in Steptoe. Under short-day conditions, vernalized Rum plants subjected to water deficit showed an advanced meristem development stage a significant earlier HD when compared with non-stressed plants. This early flowering behavior in stressed Rum plants under short-day conditions was accompanied by higher gene expression of the Vrn-H1 gene. Conclusion In conclusion, the integration of vernalization and photoperiod signals in drought-tolerant barley genotypes is associated with early flowering behavior and higher productivity in dry environments.

scholarly journals Photocontrol of Flowering and Extension Growth in the Long-day Plant Pansy

2003 ◽  
Vol 128 (4) ◽  
pp. 479-485 ◽  
Author(s):  
Erik S. Runkle ◽  
Royal D. Heins
Keyword(s):  
Flower Development ◽  
Red Light ◽  
Reproductive Development ◽  
Extension Growth ◽  
Separate Experiment ◽  
Flower Initiation ◽  
Minimal Extension ◽  
Short Day ◽  
Long Day ◽  
Light Duration

Plastics that selectively reduce the transmission of far-red light (FR, 700 to 800 nm) reduce extension growth of many floricultural crops. However, FR-deficient (FRd) environments delay flowering in some long-day plants (LDPs), including `Crystal Bowl Yellow' pansy (Viola ×wittrockiana Gams). Our objective was to determine if FR light could be added to an otherwise FRd environment to facilitate flowering with minimal extension growth. In one experiment, plants were grown under a 16-hour FRd photoperiod, and FR-rich light was added during portions of the day or night. For comparison, plants were also grown with a 9-hour photoperiod [short-day (SD) control] or under a neutral (N) filter with a 16-hour photoperiod (long day control). Flowering was promoted most (i.e., percent of plants that flowered increased and time to flower decreased) when FR-rich light was added during the entire 16-hour photoperiod, during the last 4 hours of the photoperiod, or during the first or second 4 hours after the end of the photoperiod. In a separate experiment, pansy was grown under an FRd or N filter with a 9-hour photoperiod plus 0, 0.5, 1, 2, or 4 hours of night interruption (NI) lighting that delivered a red (R, 600 to 700 nm) to FR ratio of 0.56 (low), 1.28 (moderate), or 7.29 (high). Under the N filter, the minimum NI duration that increased percent flowering was 2 hours with a moderate or low R:FR and 4 hours with a high R:FR. Under the FRd filter, 2 or 4 hours of NI lighting with a moderate or low R:FR, respectively, was required to increase percent flowering, but a 4-hour NI with a high R:FR failed to promote flowering. Pansy appears to be day-neutral with respect to flower initiation and a quantitative LDP with respect to flower development. The promotion of reproductive development was related linearly to the promotion of extension growth. Therefore, it appears that in LDPs such as pansy, light duration and quality concomitantly promote extension growth and flowering, and cannot readily be separated with lighting strategies.

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