Status and perspectives of biomarker validation for diagnosis, stratification, and treatment

Public Health ◽  
2020 ◽  
Author(s):  
J. Skov ◽  
K. Kristiansen ◽  
J. Jespersen ◽  
P. Olesen
Keyword(s):  
2013 ◽  
Author(s):  
Michael Hack ◽  
Calli Deruby ◽  
Scott Cohn
Keyword(s):  

2019 ◽  
Vol 105 (4) ◽  
pp. 943-953 ◽  
Author(s):  
Jose Vicente ◽  
Robbert Zusterzeel ◽  
Lars Johannesen ◽  
Roberto Ochoa‐Jimenez ◽  
Jay W. Mason ◽  
...  

2013 ◽  
Vol 59 (10) ◽  
pp. 1514-1522 ◽  
Author(s):  
Morteza Razavi ◽  
Lisa DS Johnson ◽  
Julian J Lum ◽  
Gary Kruppa ◽  
N Leigh Anderson ◽  
...  

BACKGROUND Biomarker validation remains one of the most challenging constraints to the development of new diagnostic assays. To facilitate biomarker validation, we previously developed a chromatography-free stable isotope standards and capture by antipeptide antibodies (SISCAPA)-MALDI assay allowing rapid, high-throughput quantification of protein analytes in large sample sets. Here we applied this assay to the measurement of a surrogate proteotypic peptide from protein C inhibitor (PCI) in sera from patients with prostate cancer. METHODS A 2-plex SISCAPA-MALDI assay for quantification of proteotypic peptides from PCI and soluble transferrin receptor (sTfR) was used to measure these peptides in 159 trypsin-digested sera collected from 51 patients with prostate cancer. These patients had been treated with radiation with or without neoadjuvant androgen deprivation. RESULTS Patients who experienced biochemical recurrence of prostate cancer showed decreased serum concentrations of the PCI peptide analyte within 18 months of treatment. The PCI peptide concentrations remained increased in the sera of patients who did not experience cancer recurrence. Prostate-specific antigen concentrations had no predictive value during the same time period. CONCLUSIONS The high-throughput, liquid chromatography–free SISCAPA-MALDI assay is capable of rapid quantification of proteotypic PCI and sTfR peptide analytes in complex serum samples. Decreased serum concentrations of the PCI peptide were found to be related to recurrence of prostate cancer in patients treated with radiation with or without hormone therapy. However, a larger cohort of patients will be required for unequivocal validation of the PCI peptide as a biomarker for clinical use.


2016 ◽  
Vol 30 (5) ◽  
pp. 624-630 ◽  
Author(s):  
Kathryn V. Papp ◽  
Elizabeth C. Mormino ◽  
Rebecca E. Amariglio ◽  
Catherine Munro ◽  
Alex Dagley ◽  
...  

Biometrics ◽  
2019 ◽  
Vol 76 (3) ◽  
pp. 843-852
Author(s):  
Tracey L. Marsh ◽  
Holly Janes ◽  
Margaret S. Pepe

Cancers ◽  
2020 ◽  
Vol 12 (11) ◽  
pp. 3349
Author(s):  
Pär Jonsson ◽  
Henrik Antti ◽  
Florentin Späth ◽  
Beatrice Melin ◽  
Benny Björkblom

Here, we present a strategy for early molecular marker pattern detection—Subset analysis of Matched Repeated Time points (SMART)—used in a mass-spectrometry-based metabolomics study of repeated blood samples from future glioma patients and their matched controls. The outcome from SMART is a predictive time span when disease-related changes are detectable, defined by time to diagnosis and time between longitudinal sampling, and visualization of molecular marker patterns related to future disease. For glioma, we detect significant changes in metabolite levels as early as eight years before diagnosis, with longitudinal follow up within seven years. Elevated blood plasma levels of myo-inositol, cysteine, N-acetylglucosamine, creatinine, glycine, proline, erythronic-, 4-hydroxyphenylacetic-, uric-, and aceturic acid were particularly evident in glioma cases. We use data simulation to ensure non-random events and a separate data set for biomarker validation. The latent biomarker, consisting of 15 interlinked and significantly altered metabolites, shows a strong correlation to oxidative metabolism, glutathione biosynthesis and monosaccharide metabolism, linked to known early events in tumor development. This study highlights the benefits of progression pattern analysis and provide a tool for the discovery of early markers of disease.


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