Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

2013 ◽  
Vol 57 ◽  
pp. 204-211 ◽  
Author(s):  
Congcong Shen ◽  
Jinbo Xiong ◽  
Huayong Zhang ◽  
Youzhi Feng ◽  
Xiangui Lin ◽  
...  
2020 ◽  
Author(s):  
Hao Qing Zhang ◽  
Xue Qiang Zhao ◽  
Yu Shi ◽  
Yuting Liang ◽  
Ren Fang Shen

Abstract Background: Ammonium (NH4+) and nitrate (NO3−) are two major inorganic nitrogen (N) forms available for plant growth. Soil microbes affect the availability and transformation of these N forms in the rhizosphere, and this affects the N-use efficiency of plants. However, little is known about the responses of the rhizosphere bacterial community structure to NH4+ and NO3−. Here, a rhizobox containing a root zone (root growing area) and various soil compartments (0–0.5 cm, 0.5–1 cm, 1–2 cm, 2–4 cm, and 4–9 cm from the root zone) was designed to investigate the spatial distribution of bacterial diversity, community structure, and co-occurrence patterns along a distance from maize (Zea mays L.) roots with the addition of 15N-labeled NH4+ or NO3− in an acidic red soil.Results: Addition of NH4+ and NO3− reduced soil bacterial diversity in the maize root zone. The structures of soil bacterial communities differed between NH4+ and NO3− in the root zone and 0.5 cm away from the root zone. Soil pH was the major driver of bacterial community assembly during plant uptake of N. Maize roots recruited potentially beneficial acidophilic bacteria (e.g. Acidibacter, Burkholderia, and Catenulispora) under NH4+ treatment, and recruited growth-promoting bacteria that prefer higher pH (e.g. Sphingomonas, Sphingobium, Azospirillum, and Novosphingobium) under NO3− treatment. In the N-fertilization treatments, the soil bacterial networks were more complex in the root zone and its adjacent 0.5–1 cm zone than in other soil compartments. The soil bacterial networks were more complex under NH4+ treatment than under NO3−. More bacterial taxa in the networks responded positively and negatively to soil residual NH4+ than to NO3− in all zones in the rhizobox.Conclusions: The combined effects of the N form and the rhizosphere influenced the spatial patterns and co-occurrence network of soil bacterial communities at different distances from the maize root zone, mainly because of changes in soil pH during the uptake of NH4+ and NO3− by maize roots. Regulating microbial communities by adjusting soil pH through NH4+ and NO3− supply may be an environmentally friendly option for promoting soil microbial functions in intensively managed agro-ecosystems.


2021 ◽  
pp. 117339
Author(s):  
Huan-Qin Li ◽  
Ying-Jia Shen ◽  
Wen-Lei Wang ◽  
Hong-Tao Wang ◽  
Hu Li ◽  
...  

2009 ◽  
Vol 75 (15) ◽  
pp. 5111-5120 ◽  
Author(s):  
Christian L. Lauber ◽  
Micah Hamady ◽  
Rob Knight ◽  
Noah Fierer

ABSTRACT Soils harbor enormously diverse bacterial populations, and soil bacterial communities can vary greatly in composition across space. However, our understanding of the specific changes in soil bacterial community structure that occur across larger spatial scales is limited because most previous work has focused on either surveying a relatively small number of soils in detail or analyzing a larger number of soils with techniques that provide little detail about the phylogenetic structure of the bacterial communities. Here we used a bar-coded pyrosequencing technique to characterize bacterial communities in 88 soils from across North and South America, obtaining an average of 1,501 sequences per soil. We found that overall bacterial community composition, as measured by pairwise UniFrac distances, was significantly correlated with differences in soil pH (r = 0.79), largely driven by changes in the relative abundances of Acidobacteria, Actinobacteria, and Bacteroidetes across the range of soil pHs. In addition, soil pH explains a significant portion of the variability associated with observed changes in the phylogenetic structure within each dominant lineage. The overall phylogenetic diversity of the bacterial communities was also correlated with soil pH (R2 = 0.50), with peak diversity in soils with near-neutral pHs. Together, these results suggest that the structure of soil bacterial communities is predictable, to some degree, across larger spatial scales, and the effect of soil pH on bacterial community composition is evident at even relatively coarse levels of taxonomic resolution.


2015 ◽  
Vol 4 (3) ◽  
pp. 475-490 ◽  
Author(s):  
Jasmin S. Seifried ◽  
Antje Wichels ◽  
Gunnar Gerdts

DYNA ◽  
2019 ◽  
Vol 86 (209) ◽  
pp. 289-297
Author(s):  
Gabriel Araújo e Silva Ferraz ◽  
Brenon Diennevan Souza Barbosa ◽  
Étore Francisco Reynaldo ◽  
Sthéfany Airane Dos Santos ◽  
Jose Roberto Moreira Ribeiro Gonçalves ◽  
...  

This study aimed to characterize the spatial variability of pH in soils of two farms in the state of Paraná, Brazil, based on two different sampling methods used in precision agriculture, by means of geostatistical analyzes. The first method of sampling the pH grid consisted in the collection of soil samples by the traditional method (1 point / ha). The second method of pH determination was by on-the-go soil sensor (200 points / ha). The spherical model was better suited to most semivariograms, regardless of the sampling method. After adjusting the semivariograms for soil pH determination methods, thematic maps were made using normal kriging. The best spatial distribution of pH was obtained where the attribute was sampled by the on-the-go sensor. The number of pH samples collected and the sampling method influenced the visual representation of pH variability.


2019 ◽  
Vol 69 (13) ◽  
pp. 1461-1473 ◽  
Author(s):  
Cheng-yu Wang ◽  
Xue Zhou ◽  
Dan Guo ◽  
Jiang-hua Zhao ◽  
Li Yan ◽  
...  

Abstract Purpose To understand which environmental factors influence the distribution and ecological functions of bacteria in agricultural soil. Method A broad range of farmland soils was sampled from 206 locations in Jilin province, China. We used 16S rRNA gene-based Illumina HiSeq sequencing to estimated soil bacterial community structure and functions. Result The dominant taxa in terms of abundance were found to be, Actinobacteria, Acidobacteria, Gemmatimonadetes, Chloroflexi, and Proteobacteria. Bacterial communities were dominantly affected by soil pH, whereas soil organic carbon did not have a significant influence on bacterial communities. Soil pH was significantly positively correlated with bacterial operational taxonomic unit abundance and soil bacterial α-diversity (P<0.05) spatially rather than with soil nutrients. Bacterial functions were estimated using FAPROTAX, and the relative abundance of anaerobic and aerobic chemoheterotrophs, and nitrifying bacteria was 27.66%, 26.14%, and 6.87%, respectively, of the total bacterial community. Generally, the results indicate that soil pH is more important than nutrients in shaping bacterial communities in agricultural soils, including their ecological functions and biogeographic distribution.


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