scholarly journals A Surface Loop Directs Conformational Switching of a Lipoyl Domain Between a Folded and a Novel Misfolded Structure

Structure ◽  
2009 ◽  
Vol 17 (8) ◽  
pp. 1117-1127 ◽  
Author(s):  
Katherine M. Stott ◽  
Adlina M. Yusof ◽  
Richard N. Perham ◽  
D. Dafydd Jones
1996 ◽  
Vol 263 (3) ◽  
pp. 463-474 ◽  
Author(s):  
Nicola G. Wallis ◽  
Mark D. Allen ◽  
R.William Broadhurst ◽  
Ivan A.D. Lessard ◽  
Richard N. Perham

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Siddarth Chandrasekaran ◽  
Connor M. Schneps ◽  
Robert Dunleavy ◽  
Changfan Lin ◽  
Cristina C. DeOliveira ◽  
...  

AbstractLight-induction of an anionic semiquinone (SQ) flavin radical in Drosophila cryptochrome (dCRY) alters the dCRY conformation to promote binding and degradation of the circadian clock protein Timeless (TIM). Specific peptide ligation with sortase A attaches a nitroxide spin-probe to the dCRY C-terminal tail (CTT) while avoiding deleterious side reactions. Pulse dipolar electron-spin resonance spectroscopy from the CTT nitroxide to the SQ shows that flavin photoreduction shifts the CTT ~1 nm and increases its motion, without causing full displacement from the protein. dCRY engineered to form the neutral SQ serves as a dark-state proxy to reveal that the CTT remains docked when the flavin ring is reduced but uncharged. Substitutions of flavin-proximal His378 promote CTT undocking in the dark or diminish undocking in the light, consistent with molecular dynamics simulations and TIM degradation activity. The His378 variants inform on recognition motifs for dCRY cellular turnover and strategies for developing optogenetic tools.


Biochemistry ◽  
2020 ◽  
Vol 59 (28) ◽  
pp. 2592-2601 ◽  
Author(s):  
Itsuki Kobayashi ◽  
Hiroto Nakajima ◽  
Osamu Hisatomi

2011 ◽  
Vol 286 (41) ◽  
pp. 35699-35707 ◽  
Author(s):  
Attila Iliás ◽  
Károly Liliom ◽  
Brigitte Greiderer-Kleinlercher ◽  
Stephan Reitinger ◽  
Günter Lepperdinger

Hyaluronan (HA), a polymeric glycosaminoglycan ubiquitously present in higher animals, is hydrolyzed by hyaluronidases (HAases). Here, we used bee HAase as a model enzyme to study the HA-HAase interaction. Located in close proximity to the active center, a bulky surface loop, which appears to obstruct one end of the substrate binding groove, was found to be functionally involved in HA turnover. To better understand kinetic changes in substrate interaction, binding of high molecular weight HA to catalytically inactive HAase was monitored by means of quartz crystal microbalance technology. Replacement of the delimiting loop by a tetrapeptide interconnection increased the affinity for HA up to 100-fold, with a KD below 1 nm being the highest affinity among HA-binding proteins surveyed so far. The experimental data of HA-HAase interaction were further validated showing best fit to the theoretically proposed sequential two-site model. Besides the one, which had been shown previously in course of x-ray structure determination, a previously unrecognized binding site works in conjunction with an unbinding loop that facilitates liberation of hydrolyzed HA.


2003 ◽  
Vol 5 (8) ◽  
pp. 1265-1267 ◽  
Author(s):  
Ryu Yamasaki ◽  
Aya Tanatani ◽  
Isao Azumaya ◽  
Shoichi Saito ◽  
Kentaro Yamaguchi ◽  
...  

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