P-A3-39 Solution structure of Δ137–149 staphylococcal nuclease obtained from molecular dynamics simulation

Progress in Biophysics and Molecular Biology ◽

10.1016/s0079-6107(97)80155-1 ◽

1996 ◽

Vol 65 ◽

pp. 49

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Staphylococcal Nuclease ◽

Dynamics Simulation

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Effects of Urea, Tetramethyl Urea, and TrimethylamineN-Oxide on Aqueous Solution Structure and Solvation of Protein Backbones: A Molecular Dynamics Simulation Study

The Journal of Physical Chemistry B ◽

10.1021/jp9084926 ◽

2010 ◽

Vol 114 (1) ◽

pp. 557-568 ◽

Author(s):

Haiyan Wei ◽

Yubo Fan ◽

Yi Qin Gao

Keyword(s):

Molecular Dynamics ◽

Aqueous Solution ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Solution Structure ◽

Dynamics Simulation ◽

Protein Backbones

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Solution Structure of a Type 1 H Antigen Trisaccharide at a Micellar Surface: NMR Relaxation and Molecular Dynamics Simulation Studies

The Journal of Physical Chemistry B ◽

10.1021/jp0136462 ◽

2002 ◽

Vol 106 (20) ◽

pp. 5275-5280 ◽

Author(s):

Kristina Lycknert ◽

Torgny Rundlöf ◽

Göran Widmalm

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Simulation Studies

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Denaturation of Truncated Staphylococcal Nuclease in Molecular Dynamics Simulation at 300 K

Journal of the American Chemical Society ◽

10.1021/ja960095y ◽

1996 ◽

Vol 118 (31) ◽

pp. 7326-7328 ◽

Author(s):

Anne Lamy ◽

Jeremy C. Smith

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Staphylococcal Nuclease ◽

Dynamics Simulation

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Molecular Dynamics Simulation of the Solution Structure near the Solid−Liquid Interface between the NaCl(100) and NaCl−KCl−H2O Solutions

Crystal Growth & Design ◽

10.1021/cg025513r ◽

2003 ◽

Vol 3 (2) ◽

pp. 209-213 ◽

Author(s):

Hirohisa Uchida ◽

Hiroshi Takiyama ◽

Masakuni Matsuoka

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Liquid Interface ◽

Dynamics Simulation ◽

Solid Liquid Interface ◽

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Molecular dynamics simulation reveals a surface salt bridge forming a kinetic trap in unfolding of truncated Staphylococcal nuclease

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.10312 ◽

2003 ◽

Vol 50 (3) ◽

pp. 507-515 ◽

Author(s):

Andreea D. Gruia ◽

Stefan Fischer ◽

Jeremy C. Smith

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Salt Bridge ◽

Staphylococcal Nuclease ◽

Dynamics Simulation ◽

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Hydration-Dependent Protein Dynamics Revealed by Molecular Dynamics Simulation of Crystalline Staphylococcal Nuclease

The Journal of Physical Chemistry B ◽

10.1021/jp710039p ◽

2008 ◽

Vol 112 (11) ◽

pp. 3522-3528 ◽

Author(s):

Yasumasa Joti ◽

Hiroshi Nakagawa ◽

Mikio Kataoka ◽

Akio Kitao

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Protein Dynamics ◽

Staphylococcal Nuclease ◽

Dynamics Simulation ◽

Dependent Protein

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Solution structure of α-conotoxin MI determined by -NMR spectroscopy and molecular dynamics simulation with the explicit solvent water

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology ◽

10.1016/s0167-4838(97)00140-4 ◽

1997 ◽

Vol 1343 (2) ◽

pp. 327-334 ◽

Author(s):

Hiroaki Gouda ◽

Ken-ichi Yamazaki ◽

Jun Hasegawa ◽

Yuji Kobayashi ◽

Yuji Nishiuchi ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nmr Spectroscopy ◽

Solution Structure ◽

Dynamics Simulation ◽

Solvent Water ◽

Explicit Solvent

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Solution structure of a conserved DNA sequence from the HIV-1 genome: Restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra

Biochemistry ◽

10.1021/bi00212a007 ◽

1993 ◽

Vol 32 (49) ◽

pp. 13419-13431 ◽

Author(s):

Anwer Mujeeb ◽

Sean M. Kerwin ◽

George L. Kenyon ◽

Thomas L. James

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dna Sequence ◽

Torsion Angle ◽

Nmr Spectra ◽

Solution Structure ◽

Dynamics Simulation ◽

Two Dimensional ◽

Hiv 1 ◽

Restrained Molecular Dynamics

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Solution Structure of HIV-1 Protease Flaps Probed by Comparison of Molecular Dynamics Simulation Ensembles and EPR Experiments

Journal of the American Chemical Society ◽

10.1021/ja800893d ◽

2008 ◽

Vol 130 (23) ◽

pp. 7184-7185 ◽

Author(s):

Fangyu Ding ◽

Melinda Layten ◽

Carlos Simmerling

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Dynamics Simulation ◽

Epr Experiments ◽

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Analysis of the solution structure of Thermosynechococcus elongatus photosystem I in n-dodecyl-β-d-maltoside using small-angle neutron scattering and molecular dynamics simulation

Archives of Biochemistry and Biophysics ◽

10.1016/j.abb.2014.04.005 ◽

2014 ◽

Vol 550-551 ◽

pp. 50-57 ◽

Author(s):

Rosemary K. Le ◽

Bradley J. Harris ◽

Ifeyinwa J. Iwuchukwu ◽

Barry D. Bruce ◽

Xiaolin Cheng ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Neutron Scattering ◽

Photosystem I ◽

Small Angle ◽

Small Angle Neutron Scattering ◽

Solution Structure ◽

Dynamics Simulation

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