scholarly journals P-A4-09 Thermal stability of a protein molecule predicted by its three dimensional structure

1996 ◽  
Vol 65 ◽  
pp. 53
Keyword(s):  
Thermal Stability ◽  
Three Dimensional ◽  
Protein Molecule ◽  
Dimensional Structure ◽  
Three Dimensional Structure ◽  
Thermal Stability Of

MRPC (Missing Regions in Polypeptide Chains): a knowledgebase

2019 ◽  
Vol 52 (6) ◽  
pp. 1422-1426
Author(s):  
Rajendran Santhosh ◽  
Namrata Bankoti ◽  
Adgonda Malgonnavar Padmashri ◽  
Daliah Michael ◽  
Jeyaraman Jeyakanthan ◽  
...  
Keyword(s):  
Protein Structures ◽  
Three Dimensional ◽  
Protein Molecule ◽  
Data Bank ◽  
Protein Crystal ◽  
Dimensional Structure ◽  
Protein Structure Analysis ◽  
Three Dimensional Structure ◽  
X Ray Crystallography ◽  
Polypeptide Chains

Missing regions in protein crystal structures are those regions that cannot be resolved, mainly owing to poor electron density (if the three-dimensional structure was solved using X-ray crystallography). These missing regions are known to have high B factors and could represent loops with a possibility of being part of an active site of the protein molecule. Thus, they are likely to provide valuable information and play a crucial role in the design of inhibitors and drugs and in protein structure analysis. In view of this, an online database, Missing Regions in Polypeptide Chains (MRPC), has been developed which provides information about the missing regions in protein structures available in the Protein Data Bank. In addition, the new database has an option for users to obtain the above data for non-homologous protein structures (25 and 90%). A user-friendly graphical interface with various options has been incorporated, with a provision to view the three-dimensional structure of the protein along with the missing regions using JSmol. The MRPC database is updated regularly (currently once every three months) and can be accessed freely at the URL http://cluster.physics.iisc.ac.in/mrpc.

scholarly journals Three-Dimensional Structure and Thermal Stability Studies of DNA Nanostructures by Energy Transfer Spectroscopy

ChemPhysChem ◽  
2010 ◽  
Vol 11 (10) ◽  
pp. 2081-2084 ◽  
Author(s):  
Jong Bum Lee ◽  
Adam S. Shai ◽  
Michael J. Campolongo ◽  
Nokyoung Park ◽  
Dan Luo
Keyword(s):  
Thermal Stability ◽  
Energy Transfer ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Dna Nanostructures ◽  
Stability Studies ◽  
Three Dimensional Structure

scholarly journals Synthesis and Thermal-Stability Study of Polybutylene Itaconate Modified with Divinyl Benzene and Glycerol

2014 ◽  
Vol 14 (3) ◽  
pp. 283-289 ◽  
Author(s):  
Atmanto Heru Wibowo ◽  
Ninis Makhnunah ◽  
Deny Irawati ◽  
Candra Purnawan ◽  
Nanik Dwi Nurhayati ◽  
...  
Keyword(s):  
Thermal Stability ◽  
Functional Group ◽  
Three Dimensional ◽  
Acid Group ◽  
Stability Study ◽  
Dimensional Structure ◽  
Constant Intensity ◽  
Divinyl Benzene ◽  
Thermal Stability Of ◽  
Thermal Stability Study

Polybutylene itaconate (PBI) for modification with divinyl benzene (DVB) and glycerol has been synthesized at 180 °C for 3 h via polycondensation of itaconic acid (IA) and butanediols using catalyst of Ti(OBu)4. Modification on PBI was done with addition of 15%, 20% and 25% DVB (w/w) using benzoyl peroxide. With glycerol, weight variations of glycerol:1,4-butanediol (BDO) in the synthesis were 10%, 30%, and 50% (mole/mole). PBI and PBI modified with DVB and glycerol were characterized with FTIR and TG-DTA. PBI showed a wavenumber shift from 1703 cm-1 to 1728 cm-1 of the C=O functional group from acid to esther. The DVB modification on PBI also showed that the intensity decrease of C=C stretching was due to the formation of crosslinking on the double bond. In the modification with glycerol, three dimensional networking on the polyester occurred through bonding between hydroxyl of glycerol and acid group of IA. Constant intensity of C=C stretching on polyester was seen. The thermal stability of PBI modified with DVB increased, accompanied by rigidity change of the structure. The thermal stability of PBI modified with glycerol decreased, caused by the decrease of regularity degree and the elasticity increase of the three dimensional structure of polyester.

Flux Synthesis of New Multinary Bismuth Chalcogenides and their Thermoelectric Properties

1998 ◽  
Vol 545 ◽  
Author(s):  
Duck-Young Chung ◽  
Kyoung-Shin Choi ◽  
Paul W. Brazis ◽  
Carl R. Kannewurf ◽  
Mercouri G. Kanatzidis
Keyword(s):  
Thermal Stability ◽  
Electrical Conductivity ◽  
Thermoelectric Properties ◽  
Solid Solutions ◽  
Three Dimensional ◽  
Melting Behavior ◽  
Dimensional Structure ◽  
Three Dimensional Structure ◽  
Flux Synthesis ◽  
Bismuth Chalcogenides

AbstractWe present the synthesis and structure of the new chalcogenide compounds, Rb0.5Bi1.83Te3, APb2Bi3Te7 (A = Cs, Rb), K1.25Pb3.50Bi7.25Se15 and A1+xPb4−2xSb7+xSe15 (A = K, Rb). The layered structures of the first two telluride compounds are related to each other in a very interesting fashion. These compounds are n-type metallic conductors and solid solutions with Se and Sb have also been synthesized. K1.25Pb3.50Bi7.25Se15 and its Sb analogs have a complex three-dimensional structure composed of NaCl- and Bi2Te3-type building units. The thermal stability, melting behavior, electrical conductivity and thermopower of these compounds are reported.

The Three-dimensional structure of frozen-hydrated nudaurelia capensis β virus

1987 ◽  
Vol 45 ◽  
pp. 650-651
Author(s):  
N. H. Olson ◽  
T. S. Baker ◽  
Wu Bo Mu ◽  
J. E. Johnson ◽  
D. A. Hendry
Keyword(s):  
South African ◽  
Rna Virus ◽  
Carbon Film ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Electron Dose ◽  
Total Electron ◽  
Three Dimensional Structure ◽  
Negative Stain ◽  
Dimensional Reconstruction

Nudaurelia capensis β virus (NβV) is an RNA virus of the South African Pine Emperor moth, Nudaurelia cytherea capensis (Lepidoptera: Saturniidae). The NβV capsid is a T = 4 icosahedron that contains 60T = 240 subunits of the coat protein (Mr = 61,000). A three-dimensional reconstruction of the NβV capsid was previously computed from visions embedded in negative stain suspended over holes in a carbon film. We have re-examined the three-dimensional structure of NβV, using cryo-microscopy to examine the native, unstained structure of the virion and to provide a initial phasing model for high-resolution x-ray crystallographic studiesNβV was purified and prepared for cryo-microscopy as described. Micrographs were recorded ∼1 - 2 μm underfocus at a magnification of 49,000X with a total electron dose of about 1800 e-/nm2.

Three Dimensional structure and organization of diploid chromosomes by optical section microscopy

1987 ◽  
Vol 45 ◽  
pp. 633-635
Author(s):  
David A. Agard ◽  
Yasushi Hiraoka ◽  
John W. Sedat
Keyword(s):  
Dimensional Space ◽  
Three Dimensional ◽  
Developmental State ◽  
Mitotic Cell ◽  
Biological Properties ◽  
Dimensional Structure ◽  
Specific Gene ◽  
Three Dimensional Structure ◽  
Complementary Techniques ◽  
Dynamic Structures

In an effort to understand the complex relationship between structure and biological function within the nucleus, we have embarked on a program to examine the three-dimensional structure and organization of Drosophila melanogaster embryonic chromosomes. Our overall goal is to determine how DNA and proteins are organized into complex and highly dynamic structures (chromosomes) and how these chromosomes are arranged in three dimensional space within the cell nucleus. Futher, we hope to be able to correlate structual data with such fundamental biological properties as stage in the mitotic cell cycle, developmental state and transcription at specific gene loci.Towards this end, we have been developing methodologies for the three-dimensional analysis of non-crystalline biological specimens using optical and electron microscopy. We feel that the combination of these two complementary techniques allows an unprecedented look at the structural organization of cellular components ranging in size from 100A to 100 microns.

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