Constructing a useful tool for characterizing amino acid conformers by means of quantum chemical and graph theory indices

2002 ◽  
Vol 26 (6) ◽  
pp. 667-682 ◽  
Author(s):  
Constanza Cárdenas ◽  
Mateo Obregón ◽  
Eugenio-José Llanos ◽  
Eduardo Machado ◽  
Hugo-Javier Bohórquez ◽  
...  
BIOPHYSICS ◽  
2007 ◽  
Vol 52 (3) ◽  
pp. 261-267 ◽  
Author(s):  
M. S. Kondratiev ◽  
A. V. Kabanov ◽  
V. M. Komarov

2020 ◽  
Vol 92 (1) ◽  
pp. 3-13 ◽  
Author(s):  
Davide Corinti ◽  
Roberto Paciotti ◽  
Nazzareno Re ◽  
Cecilia Coletti ◽  
Barbara Chiavarino ◽  
...  

AbstractThe primary intermediates resulting from the interaction of cisplatin, cis-(PtCl2(NH3)2], most widespread antitumor drug, with biomolecular targets are characterized. Electrospray ionization is used to deliver ions formed in solution into the gas phase where they are structurally interrogated by vibrational “action” spectroscopy in conjunction with quantum chemical calculations. The aquation products, cis-[PtX(NH3)2(H2O)]+ (X = Cl, OH), lying along the path responsible for biological activity, are shown to display distinctive features responding to ligation pattern and optimized geometry. The IR spectra of trans-[PtX(NH3)2(H2O)]+ are different, testifying that cis and trans complexes are stable, non interconverting species both in solution and in the gas phase. Ligand substitution by simple nucleophiles (L = pyridine, 4(5)-methylimidazole, thioanisole, trimethylphosphate, acetamide, dimethylacetamide, urea and thiourea) yields cis-[PtCl(NH3)2(L)]+ complexes displaying remarkable regioselectivity whenever L presents multiple candidate platination sites. The incipient formation of cisplatin-derived complexes with the recognized biological amino acid targets L-histidine (His) and L-methionine (Met) has been investigated revealing the primary platination event to be mainly directed at the Nπ atom of the imidazole side chain of His and to the thiomethyl sulfur of Met. The isomer and conformer population of the ensuing cis-[PtCl(NH3)2(Met/His)]+ complexes, sampled in the gas phase, can be ascertained by photofragmentation kinetics on isomer/conformer specific resonances.


1993 ◽  
Vol 48 (8) ◽  
pp. 1133-1137 ◽  
Author(s):  
F. Dietz ◽  
K. Rommel-Möhle ◽  
A. Schleitzer ◽  
N. Tyutyulkov

The long-wavelength absorption of the dye formed at the ninhydrin-amino acid color reaction is caused by the anion (enolate) of diketohydrindamine-diketohydrindylidene (Ruhemann’s purple). Using the results of quantum-chemical calculations (MNDO, PPP) the basic chromophoric system was identified as two coupled five-membered rings which have partial anti-aromatic character like the antiaromatic cyclopentadienyl cation.


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