379 ULTRA-DEEP PYROSEQUENCING OF BASIC CORE PROMOTER, PRECORE AND CORE REGIONS OF HEPATITIS B VIRUS TO STUDY VIRAL VARIABILITY AND QUASISPECIES COMPLEXITY

2013 ◽  
Vol 58 ◽  
pp. S156
Author(s):  
M. Homs ◽  
J. Gregori ◽  
M. Buti ◽  
D. Tabernero ◽  
S. Camós ◽  
...  
2020 ◽  
Author(s):  
Jianhua Yin ◽  
Xi Chen ◽  
Nan Li ◽  
Xuewen Han ◽  
Wenbin Liu ◽  
...  

Abstract Serum hepatitis B virus (HBV) mutations can predict hepatocellular carcinoma (HCC) occurrence. We aimed to clarify if HBV evolves synchronously in the sera, adjacent liver, and tumors and predict HCC prognosis equally. A total of 203 HBV-positive HCC patients with radical hepatectomy in Shanghai, China during 2011-2015 were enrolled in this prospective study. Quasispecies complexity (QC) in HBV core promoter region was assessed using clone-based sequencing. We performed RNA-sequencing on tumors and paired adjacent tissues of another 15 HCC patients and analyzed it with 3 public datasets containing 127 samples. HBV QC was positively correlated to APOBEC3s’ expression level (r=0.28, p<0.001), higher in the adjacent tissues than in the tumors (p=6.50e-3), and higher in early tumors than in advanced tumors (p=0.039). The evolutionary distance between the sera-derived HBV strains and the tumor-derived ones was significantly longer than that between the sera-derived ones and the adjacent tissue-derived ones (p<0.001). Multivariate Cox regression analyses indicated that high HBV QC in the sera predicted an unfavorable overall survival (OS) (p=0.002) and recurrence-free survival (RFS) (p=0.004) in HCC; whereas it in the tumors predicted a favorable RFS (p<0.001), respectively. APOBECs-related HBV mutations including G1764A were more frequent in the sera than in the adjacent tissues. High-frequent A1762T/G1764A in the sera predicted an unfavorable RFS (p<0.001); whereas it in the tumors predicted a favorable RFS (p=0.035). In conclusion, HBV evolves more advanced in the sera than in the tumors. HBV QC and A1762T/G1764A in the sera and tumors have contrary prognostic effects in HCC.


2007 ◽  
Vol 75 (2) ◽  
pp. 139-145 ◽  
Author(s):  
Yan Wang ◽  
Lai Wei ◽  
Dong Jiang ◽  
Xu Cong ◽  
Ran Fei ◽  
...  

2007 ◽  
Vol 80 (1) ◽  
pp. 27-46 ◽  
Author(s):  
Anna Kramvis ◽  
Kazuko Arakawa ◽  
Mimi C. Yu ◽  
Ramon Nogueira ◽  
Daniel O. Stram ◽  
...  

2016 ◽  
Vol 22 (11) ◽  
pp. 3268 ◽  
Author(s):  
Xiao-Ling Wang ◽  
Jian-Ping Ren ◽  
Xue-Qing Wang ◽  
Xiao-Hong Wang ◽  
Shao-Fang Yang ◽  
...  

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