Interaction of nuclear receptor zinc finger DNA binding domains with histone deacetylase

2003 ◽  
Vol 206 (1-2) ◽  
pp. 1-12 ◽  
Author(s):  
Peter J. Franco ◽  
Guangjin Li ◽  
Li-Na Wei
2015 ◽  
Vol 116 (11) ◽  
pp. 2435-2444 ◽  
Author(s):  
Mir A. Hossain ◽  
Joeva J. Barrow ◽  
Yong Shen ◽  
MD Imdadul Haq ◽  
Jörg Bungert

Author(s):  
Mazen Hamed ◽  
Reema Siam ◽  
Roza Zaid

Zinc finger proteins (ZFP) play important roles in cellular processes. The DNA binding region of ZFP consists of 3 zinc finger DNA binding domains connected by amino acid linkers, the sequence TGQKP connects ZF1 and ZF2, and TGEKP connects ZF2 with ZF3. Linkers act to tune the zinc finger protein in the right position to bind its DNA target, the type of amino acid residues and length of linkers reflect on ZF1-ZF2-ZF3 interactions and contribute to the search and recognition process of ZF protein to its DNA target. Linker mutations and the affinity of the resulting mutants to specific and nonspecific DNA targets were studied by MD simulations and MM_GB(PB)SA. The affinity of mutants to DNA varied with type and position of amino acid residue. Mutation of K in TGQKP resulted in loss in affinity due to the loss of positive K interaction with phosphates, mutation of G showed loss in affinity to DNA, WT protein and all linker mutants showed loss in affinity to a nonspecific DNA target, this finding confirms previous reports which interpreted this loss in affinity as due to ZF1 having an anchoring role, and ZF3 playing an explorer role in the binding mechanism. The change in ZFP-DNA affinity with linker mutations is discussed in view of protein structure and role of linker residues in binding.


Nature ◽  
1991 ◽  
Vol 349 (6305) ◽  
pp. 175-178 ◽  
Author(s):  
Jeannette Nardelli ◽  
Toby J. Gibson ◽  
Christine Vesque ◽  
Patrick Charnay

2002 ◽  
Vol 22 (1) ◽  
pp. 357-369 ◽  
Author(s):  
Lan Ko ◽  
Guemalli R. Cardona ◽  
Alexandra Henrion-Caude ◽  
William W. Chin

ABSTRACT Gene activation mediated by nuclear receptors is regulated in a tissue-specific manner and requires interactions between nuclear receptors and their cofactors. Here, we identified and characterized a tissue-specific coactivator, GT198, that interacts with the DNA-binding domains of nuclear receptors. GT198 was originally described as a genomic transcript that mapped to the human breast cancer susceptibility locus 17q12-q21 with unknown function. We show that GT198 exhibits a tissue-specific expression pattern in which its mRNA is elevated in testis, spleen, thymus, pituitary cells, and several cancer cell lines. GT198 is a 217-amino-acid nuclear protein that contains a leucine zipper required for its dimerization. In vitro binding and yeast two-hybrid assays indicated that GT198 interacted with nuclear receptors through their DNA-binding domains. GT198 potently stimulated transcription mediated by estrogen receptor α and β, thyroid hormone receptor β1, androgen receptor, glucocorticoid receptor, and progesterone receptor. However, the action of GT198 was distinguishable from that of the ligand-binding domain-interacting nuclear receptor coactivators, such as TRBP, CBP, and SRC-1, with respect to basal activation and hormone sensitivity. Furthermore, protein kinase A, protein kinase C, and mitogen-activated protein kinase can phosphorylate GT198 in vitro, and cotransfection of these kinases regulated the transcriptional activity of GT198. These data suggest that GT198 is a tissue-specific, kinase-regulated nuclear receptor coactivator that interacts with the DNA-binding domains of nuclear receptors.


BMC Genomics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 659 ◽  
Author(s):  
Justin E Dalton ◽  
Justin M Fear ◽  
Simon Knott ◽  
Bruce S Baker ◽  
Lauren M McIntyre ◽  
...  

1993 ◽  
Vol 90 (19) ◽  
pp. 9186-9190 ◽  
Author(s):  
T. E. Wilson ◽  
K. A. Padgett ◽  
M. Johnston ◽  
J. Milbrandt

1995 ◽  
Vol 14 (11) ◽  
pp. 971-981 ◽  
Author(s):  
RITA LANGE ◽  
ANNETTE CHRISTOPH ◽  
HANS-JÜRGEN THIESEN ◽  
GABY VOPPER ◽  
KENNETH R. JOHNSON ◽  
...  

1994 ◽  
Vol 14 (3) ◽  
pp. 1786-1795 ◽  
Author(s):  
J F Morris ◽  
R Hromas ◽  
F J Rauscher

The myeloid zinc finger gene 1, MZF1, encodes a transcription factor which is expressed in hematopoietic progenitor cells that are committed to myeloid lineage differentiation. MZF1 contains 13 C2H2 zinc fingers arranged in two domains which are separated by a short glycine- and proline-rich sequence. The first domain consists of zinc fingers 1 to 4, and the second domain is formed by zinc fingers 5 to 13. We have determined that both sets of zinc finger domains bind DNA. Purified, recombinant MZF1 proteins containing either the first set of zinc fingers or the second set were prepared and used to affinity select DNA sequences from a library of degenerate oligonucleotides by using successive rounds of gel shift followed by PCR amplification. Surprisingly, both DNA-binding domains of MZF1 selected similar DNA-binding consensus sequences containing a core of four or five guanine residues, reminiscent of an NF-kappa B half-site: 1-4, 5'-AGTGGGGA-3'; 5-13, 5'-CGGGnGAGGGGGAA-3'. The full-length MZF1 protein containing both sets of zinc finger DNA-binding domains recognizes synthetic oligonucleotides containing either the 1-4 or 5-13 consensus binding sites in gel shift assays. Thus, we have identified the core DNA consensus binding sites for each of the two DNA-binding domains of a myeloid-specific zinc finger transcription factor. Identification of these DNA-binding sites will allow us to identify target genes regulated by MZF1 and to assess the role of MZF1 as a transcriptional regulator of hematopoiesis.


PLoS ONE ◽  
2019 ◽  
Vol 14 (11) ◽  
pp. e0224703
Author(s):  
Gabriela Alvite ◽  
Ximena Riera ◽  
Saira Cancela ◽  
Margot Paulino ◽  
Adriana Esteves

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