“Soft”-cuticle protein secondary structure as revealed by FT-Raman, ATR FT-IR and CD spectroscopy

2001 ◽  
Vol 31 (9) ◽  
pp. 877-885 ◽  
Author(s):  
Vassiliki A Iconomidou ◽  
Georgios D Chryssikos ◽  
Vassilis Gionis ◽  
Judith H Willis ◽  
Stavros J Hamodrakas
2020 ◽  
Vol 10 (17) ◽  
pp. 5918
Author(s):  
Azin Sadat ◽  
Iris J. Joye

FTIR and Raman spectroscopy are often used to investigate the secondary structure of proteins. Focus is then often laid on the different features that can be distinguished in the Amide I band (1600–1700 cm−1) and, to a lesser extent, the Amide II band (1510–1580 cm−1), signature regions for C=O stretching/N-H bending, and N-H bending/C-N stretching vibrations, respectively. Proper investigation of all hidden and overlapping features/peaks is a necessary step to achieve reliable analysis of FTIR and FT-Raman spectra of proteins. This paper discusses a method to identify, separate, and quantify the hidden peaks in the amide I band region of infrared and Raman spectra of four globular proteins in aqueous solution as well as hydrated zein and gluten proteins. The globular proteins studied, which differ widely in terms of their secondary structures, include immunoglobulin G, concanavalin A, lysozyme, and trypsin. Peak finding was done by analysis of the second derivative of the original spectra. Peak separation and quantification was achieved by curve fitting using the Voigt function. Structural data derived from the FT-Raman and FTIR analyses were compared to literature reports on protein structure. This manuscript proposes an accurate method to analyze protein secondary structure based on the amide I band in vibrational spectra.


2008 ◽  
Vol 392 (1-2) ◽  
pp. 129-135 ◽  
Author(s):  
Katia Wehbe ◽  
Raphael Pinneau ◽  
Michel Moenner ◽  
Gérard Déléris ◽  
Cyril Petibois

2005 ◽  
Vol 19 (1) ◽  
pp. 43-51 ◽  
Author(s):  
Andrew J. Miles ◽  
Frank Wien ◽  
Jonathan G. Lees ◽  
B.A. Wallace

Circular dichroism (CD) spectroscopy is an important tool in structural biology, especially for protein secondary structure analyses. Synchrotron radiation circular dichroism (SRCD) spectroscopy is a modified version of the technique that uses the intense light from a synchrotron source to enable the collection of data to much lower wavelengths than possible on conventional circular dichroism (cCD) instruments. There is a need for standardization of calibration methods amongst and between cCD and SRCD instruments to ensure consistency and the ability to use common reference databases for empirical secondary structural analyses. In a previous study (Spectroscopy17(2003), 653–661), we compared optical rotation measurements on several cCD and SRCD instruments, whilst holding constant other experimental factors. In this study, other experimental parameters which contribute to the spectral magnitude, such as cell pathlength and protein concentration determinations, are examined. In addition, the extent of wavelength calibration variations between instruments and their effects on secondary structure calculations have been examined. Hence, this paper provides additional practical guidance for “good practice” in the measurement of CD data.


2000 ◽  
Vol 132 (2) ◽  
pp. 112-122 ◽  
Author(s):  
V.A. Iconomidou ◽  
D.G. Chryssikos ◽  
V. Gionis ◽  
M.A. Pavlidis ◽  
A. Paipetis ◽  
...  

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