scholarly journals Physiological noise suppression for functional magnetic resonance imaging by normalized least mean square adaptive filtering

NeuroImage ◽  
2001 ◽  
Vol 13 (6) ◽  
pp. 155
Author(s):  
Ing-Jye Huang ◽  
Kai-Hsiang Chuang ◽  
Yi-Jui Liu ◽  
Fu-Nie Wang ◽  
Cheng-Yu Chen ◽  
...  
2013 ◽  
Vol 23 (03) ◽  
pp. 1350011 ◽  
Author(s):  
PAOLO PIAGGI ◽  
DANILO MENICUCCI ◽  
CLAUDIO GENTILI ◽  
GIACOMO HANDJARAS ◽  
ANGELO GEMIGNANI ◽  
...  

Functional magnetic resonance imaging (fMRI) is used to study brain functional connectivity (FC) after filtering the physiological noise (PN). Herein, we employ: adaptive filtering for removing nonstationary PN; random variables (RV) coefficient for FC analysis. Comparisons with standard techniques were performed by quantifying PN filtering and FC in neural vs. non-neural regions. As a result, adaptive filtering plus RV coefficient showed a greater suppression of PN and higher connectivity in neural regions, representing a novel effective approach to analyze fMRI data.


NeuroImage ◽  
2008 ◽  
Vol 39 (2) ◽  
pp. 680-692 ◽  
Author(s):  
Jonathan C.W. Brooks ◽  
Christian F. Beckmann ◽  
Karla L. Miller ◽  
Richard G. Wise ◽  
Carlo A. Porro ◽  
...  

2020 ◽  
Author(s):  
Samuel J. Harrison ◽  
Samuel Bianchi ◽  
Jakob Heinzle ◽  
Klaas Enno Stephan ◽  
Sandra Iglesias ◽  
...  

In this technical note, we introduce a new method for estimating changes in respiratory volume per unit time (RVT) from respiratory bellows recordings. By using techniques from the electrophysiological literature, in particular the Hilbert transform, we show how we can better characterise breathing rhythms, with the goal of improving physiological noise correction in functional magnetic resonance imaging (fMRI). Specifically, our approach leads to a representation with higher time resolution and better captures atypical breathing events than current peak-based RVT estimators. Finally, we demonstrate that this leads to an increase in the amount of respiration-related variance removed from fMRI data when used as part of a typical preprocessing pipeline. Our implementation will be publicly available as part of the PhysIO package, which is distributed as part of the open-source TAPAS toolbox (https://translationalneuromodeling.org/tapas).


2020 ◽  
Vol 11 (6) ◽  
pp. 737-752
Author(s):  
Hamed Dehghani ◽  
◽  
Mohammad Ali Oghabian ◽  
Seyed Amir Hosein Batouli ◽  
Jalil Arab Kheradmand ◽  
...  

Introduction: Functional magnetic resonance imaging (fMRI) methods have been used to study sensorimotor processing in the spinal cord. However, these techniques confront unwanted noises to the measured signal from the physiological fluctuations. In the spinal cord imaging, most of the challenges are consequences of cardiac and respiratory movement artifacts that are considered as significant sources of noise, especially in the thoracolumbar region. In this study, we investigated the effect of each source of physiological noise and their contribution to the outcome of the analysis of the blood-oxygen-level-dependent signal in the human thoracolumbar spinal cord. Methods: Fifteen young healthy male volunteers participated in the study, and pain stimuli were delivered on the L5 dermatome between the two malleoli. Respiratory and cardiac signals were recorded during the imaging session, and the generated respiration and cardiac regressors were included in the general linear model for quantification of the effect of each of them on the task-analysis results. The sum of active voxels of the clusters was calculated in the spinal cord in three correction states (respiration correction only, cardiac correction only, and respiration and cardiac noise corrections) and analyzed with analysis of variance statistical test and receiver operating characteristic curve. Results: The results illustrated that cardiac noise correction had an effective role in increasing the active voxels (Mean±SD= 23.46±9.46) compared to other noise correction methods. Cardiac effects were higher than other physiological noise sources Conclusion: In summary, our results indicate great respiration effects on the lumbar and thoracolumbar spinal cord fMRI, and its contribution to the heartbeat effect can be a significant variable in the individual fMRI data analysis. Displacement of the spinal cord and the effects of this noise in the thoracolumbar and lumbar spinal cord fMRI results are significant and cannot be ignored.


2008 ◽  
Vol 28 (6) ◽  
pp. 1337-1344 ◽  
Author(s):  
Ann K. Harvey ◽  
Kyle T.S. Pattinson ◽  
Jonathan C.W. Brooks ◽  
Stephen D. Mayhew ◽  
Mark Jenkinson ◽  
...  

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