scholarly journals A Fluorogenic Histone Deacetylase Assay Well Suited for High-Throughput Activity Screening

2003 ◽  
Vol 10 (1) ◽  
pp. 61-68 ◽  
Author(s):  
Dennis Wegener ◽  
Frank Wirsching ◽  
Daniel Riester ◽  
Andreas Schwienhorst
2017 ◽  
Vol 19 (suppl_4) ◽  
pp. iv57-iv58
Author(s):  
Viktoria Marquardt ◽  
David Pauck ◽  
Finn K. Hansen ◽  
Daniel Picard ◽  
Jörg Felsberg ◽  
...  

2013 ◽  
Vol 405 (14) ◽  
pp. 4969-4973 ◽  
Author(s):  
Tristan de Rond ◽  
Pamela Peralta-Yahya ◽  
Xiaoliang Cheng ◽  
Trent R. Northen ◽  
Jay D. Keasling

2015 ◽  
Vol 107 (11) ◽  
pp. djv247 ◽  
Author(s):  
Paul Geeleher ◽  
Andrey Loboda ◽  
Divya Lenkala ◽  
Fan Wang ◽  
Bonnie LaCroix ◽  
...  

Author(s):  
P. Opdensteinen ◽  
S. J. Dietz ◽  
B. B. Gengenbach ◽  
J. F. Buyel

Biofilm-forming bacteria are sources of infections because they are often resistant to antibiotics and chemical removal. Recombinant biofilm-degrading enzymes have the potential to remove biofilms gently, but they can be toxic toward microbial hosts and are therefore difficult to produce in bacteria. Here, we investigated Nicotiana species for the production of such enzymes using the dispersin B-like enzyme Lysobacter gummosus glyco 2 (Lg2) as a model. We first optimized transient Lg2 expression in plant cell packs using different subcellular targeting methods. We found that expression levels were transferable to differentiated plants, facilitating the scale-up of production. Our process yielded 20 mg kg−1 Lg2 in extracts but 0.3 mg kg−1 after purification, limited by losses during depth filtration. Next, we established an experimental biofilm assay to screen enzymes for degrading activity using different Bacillus subtilis strains. We then tested complex and chemically defined growth media for reproducible biofilm formation before converting the assay to an automated high-throughput screening format. Finally, we quantified the biofilm-degrading activity of Lg2 in comparison with commercial enzymes against our experimental biofilms, indicating that crude extracts can be screened directly. This ability will allow us to combine high-throughput expression in plant cell packs with automated activity screening.


2021 ◽  
Author(s):  
Anne-Eva Nieuwelink ◽  
Jeroen C. Vollenbroek ◽  
Roald M. Tiggelaar ◽  
Johan G. Bomer ◽  
Albert van den Berg ◽  
...  

BMC Genomics ◽  
2014 ◽  
Vol 15 (1) ◽  
pp. 528 ◽  
Author(s):  
Ann-Christin Gaupel ◽  
Thomas Begley ◽  
Martin Tenniswood

2011 ◽  
Vol 286 (24) ◽  
pp. 21083-21091 ◽  
Author(s):  
Sofiya Micheva-Viteva ◽  
Yoshifumi Kobayashi ◽  
Leonard C. Edelstein ◽  
Annmarie L. Pacchia ◽  
Hui-Ling Rose Lee ◽  
...  

2011 ◽  
Vol 16 (10) ◽  
pp. 1206-1216 ◽  
Author(s):  
Patricia Haus ◽  
Michael Korbus ◽  
Michael Schröder ◽  
Franz-Josef Meyer-Almes

Histone deacetylases (HDACs) are important epigenetic factors regulating a variety of vital cellular functions such as cell cycle progression, differentiation, cell migration, and apoptosis. Consequently, HDACs have emerged as promising targets for cancer therapy. The drugability of HDACs has been shown by the discovery of several structural classes of inhibitors (HDACis), particularly by the recent approval of two HDACis, vorinostat (ZOLINZA) and romidepsin (Istodax), for the treatment of cutaneous T-cell lymphoma by the US Food and Drug Administration. The outstanding potential of HDACis, with a defined isoform selectivity profile as drugs against a plurality of diseases, vindicates increased effort in developing high-throughput capable assays for screening campaigns. In this study, a dual-competition assay exploiting changes in fluorescence anisotropy and lifetime was used to screen the LOPAC (Sigma-Aldrich, St Louis, MO) library against the bacterial histone deacetylase homologue HDAH from Bordetella, which shares 35% identity with the second deacetylase domain of HDAC6. The binding assay proved to be highly suitable for high-throughput screening campaigns. Several LOPAC compounds have been identified to inhibit HDAH in the lower micromolar range. Most interestingly, some of the hit compounds turned out to be weak but selective inhibitors of human class IIa and IIb HDACs.


2005 ◽  
Vol 11 (2) ◽  
pp. 176-183 ◽  
Author(s):  
Curtis J. Henrich ◽  
Heidi R. Bokesch ◽  
Michael Dean ◽  
Susan E. Bates ◽  
Robert W. Robey ◽  
...  

ABCG2 is a member of the adenosine triphosphate (ATP)-binding cassette family of multidrug transporters associated with resistance of tumor cells to many cytotoxic agents. Evaluation of modulators of ABCG2 activity has relied on methods such as drug sensitization, biochemical characterization, and transport studies. To search for novel inhibitors of ABCG2, a fluorescent cell-based assay was developed for application in high-throughput screening. Accumulation of pheophorbide a (PhA), an ABCG2-specific substrate, forms the basis for the assay in NCI-H460/MX20 cells overexpressing wild-type ABCG2. Treatment of these cells with 10 μM fumitremorgin C (FTC), a specific ABCG2 inhibitor, increased cell accumulation of PhA to 5.6 times control (Z′ 0.5). Validation included confirmation with known ABCG2 inhibitors: FTC, novobiocin, tariquidar, and quercetin. Verapamil, reported to inhibit P-glycoprotein but not ABCG2, had insignificant activity. Screening of a library of 3523 natural products identified 11 compounds with high activity (≥ 50% of FTC, confirmed by reassay), including 3 flavonoids, members of a family of compounds that include ABCG2 inhibitors. One of the inhibitors detected, eupatin, was moderately potent (IC50 of 2.2 μM) and, like FTC, restored sensitivity of resistant cells to mitoxantrone. Application of this assay to other libraries of synthetic compounds and natural products is expected to identify novel inhibitors of ABCG2 activity.


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