scholarly journals 589: Lowering the hurdle for nonsense suppressor tRNA delivery through sequence optimization

2021 ◽  
Vol 20 ◽  
pp. S280
Author(s):  
J. Porter ◽  
W. Ko ◽  
K. Edwards ◽  
J. Lueck
2010 ◽  
Vol 38 (19) ◽  
pp. 6813-6830 ◽  
Author(s):  
Randall A. Hughes ◽  
Andrew D. Ellington

2015 ◽  
Vol 112 (19) ◽  
pp. 6015-6020 ◽  
Author(s):  
Arpita Bhattacharya ◽  
Caroline Köhrer ◽  
Debabrata Mandal ◽  
Uttam L. RajBhandary

Bacterial strains carrying nonsense suppressor tRNA genes played a crucial role in early work on bacterial and bacterial viral genetics. In eukaryotes as well, suppressor tRNAs have played important roles in the genetic analysis of yeast and worms. Surprisingly, little is known about genetic suppression in archaea, and there has been no characterization of suppressor tRNAs or identification of nonsense mutations in any of the archaeal genes. Here, we show, using the β-gal gene as a reporter, that amber, ochre, and opal suppressors derived from the serine and tyrosine tRNAs of the archaeonHaloferax volcaniiare active in suppression of their corresponding stop codons. Using a promoter for tRNA expression regulated by tryptophan, we also show inducible and regulatable suppression of all three stop codons inH. volcanii. Additionally, transformation of aΔpyrE2 H. volcaniistrain with plasmids carrying the genes for apyrE2amber mutant and the serine amber suppressor tRNA yielded transformants that grow on agar plates lacking uracil. Thus, an auxotrophic amber mutation in thepyrE2gene can be complemented by expression of the amber suppressor tRNA. These results pave the way for generating archaeal strains carrying inducible suppressor tRNA genes on the chromosome and their use in archaeal and archaeviral genetics. We also provide possible explanations for why suppressor tRNAs have not been identified in archaea.


Selenium ◽  
2016 ◽  
pp. 3-12 ◽  
Author(s):  
Bradley A. Carlson ◽  
Byeong Jae Lee ◽  
Petra A. Tsuji ◽  
Ryuta Tobe ◽  
Jin Mo Park ◽  
...  

Procedia CIRP ◽  
2021 ◽  
Vol 96 ◽  
pp. 51-56
Author(s):  
B. Denkena ◽  
M.-A. Dittrich ◽  
S. Wilmsmeier ◽  
S.J. Settnik

Genetics ◽  
1998 ◽  
Vol 149 (4) ◽  
pp. 1763-1775 ◽  
Author(s):  
Bénédicte Gagny ◽  
Philippe Silar

Abstract In an attempt to decipher their role in the life history and senescence process of the filamentous fungus Podospora anserina, we have cloned the su1 and su2 genes, previously identified as implicated in cytosolic translation fidelity. We show that these genes are the equivalents of the SUP35 and SUP45 genes of Saccharomyces cerevisiae, which encode the cytosolic translation termination factors eRF3 and eRF1, respectively. Mutations in these genes that suppress nonsense mutations may lead to drastic mycelium morphology changes and sexual impairment but have little effect on life span. Deletion of su1, coding for the P. anserina eRF3, is lethal. Diminution of its expression leads to a nonsense suppressor phenotype whereas its overexpression leads to an antisuppressor phenotype. P. anserina eRF3 presents an N-terminal region structurally related to the yeast eRF3 one. Deletion of the N-terminal region of P. anserina eRF3 does not cause any vegetative alteration; especially life span is not changed. However, it promotes a reproductive impairment. Contrary to what happens in S. cerevisiae, deletion of the N terminus of the protein promotes a nonsense suppressor phenotype. Genetic analysis suggests that this domain of eRF3 acts in P. anserina as a cis-activator of the C-terminal portion and is required for proper reproduction.


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