An historical and genomic view of schistosome conjugal biology with emphasis on sex-specific gene expression

Parasitology ◽  
2004 ◽  
Vol 128 (S1) ◽  
pp. S11-S22 ◽  
Author(s):  
K. F. HOFFMANN

The genetic programmes associated with the sexual biology of dioecious schistosomes remain a critically important but significantly understudied area of parasitology. Throughout the last four decades, progress has been slow in describing the gross antigenic and proteomic differences linked to sexually mature schistosomes and in characterizing some of the sex-associated transcripts and regulatory mechanisms induced during developmental maturation. These investigations have been severely hindered by the lack of complete EST/genomic information, as well as corresponding post- and functional-genomic tools for studying these pathogenic parasites. As near complete transcriptomes forSchistosoma japonicumandS. mansonihave recently been reported, and both DNA microarrays and post-transcriptional gene silencing have been applied to schistosomes, the tools and techniques for the high-throughput identification and characterization of transcripts involved in conjugal biology are now readily available. Here, an historical review is presented that summarizes some of the most significant findings associated with schistosome sex and sexual maturation during the last several decades. Following this discussion is a current overview of some modern day genomic approaches used to study schistosomes, which illustrates how major advances in the field of conjugal biology will be achieved.

2019 ◽  
Author(s):  
Wei Fang ◽  
Yi Wen ◽  
Xiangyun Wei

AbstractTissue-specific or cell type-specific transcription of protein-coding genes is controlled by both trans-regulatory elements (TREs) and cis-regulatory elements (CREs). However, it is challenging to identify TREs and CREs, which are unknown for most genes. Here, we describe a protocol for identifying two types of transcription-activating CREs—core promoters and enhancers—of zebrafish photoreceptor type-specific genes. This protocol is composed of three phases: bioinformatic prediction, experimental validation, and characterization of the CREs. To better illustrate the principles and logic of this protocol, we exemplify it with the discovery of the core promoter and enhancer of the mpp5b apical polarity gene (also known as ponli), whose red, green, and blue (RGB) cone-specific transcription requires its enhancer, a member of the rainbow enhancer family. While exemplified with an RGB cone-specific gene, this protocol is general and can be used to identify the core promoters and enhancers of other protein-coding genes.


2001 ◽  
Vol 114 (21) ◽  
pp. 3857-3863
Author(s):  
Markus Fuhrmann ◽  
Alke Stahlberg ◽  
Elena Govorunova ◽  
Simone Rank ◽  
Peter Hegemann

The chlamyopsin gene (cop) encodes the most abundant eyespot protein in the unicellular green alga Chlamydomonas reinhardtii. This opsin-related protein (COP) binds retinal and was thought to be the photoreceptor controlling photomovement responses via a set of photoreceptor currents. Unfortunately, opsin-deficient mutants are not available and targeted disruption of non-selectable nuclear genes is not yet possible in any green alga. Here we show that intron-containing gene fragments directly linked to their intron-less antisense counterpart provide efficient post-transcriptional gene silencing (PTGS) in C. reinhardtii, thus allowing an efficient reduction of a specific gene product in a green alga. In opsin-deprived transformants, flash-induced photoreceptor currents (PC) are left unchanged. Moreover, photophobic responses as studied by motion analysis and phototaxis tested in a light-scattering assay were indistinguishable from the responses of untransformed wild-type cells. We conclude that phototaxis and photophobic responses in C. reinhardtii are triggered by an as yet unidentified rhodopsin species.


2019 ◽  
Vol 21 (Supplement_2) ◽  
pp. ii109-ii109
Author(s):  
Claudio Ballabio ◽  
Marica Anderle ◽  
Matteo Gianesello ◽  
Giuseppe Aiello ◽  
Luca Tiberi

Genomics ◽  
2001 ◽  
Vol 71 (1) ◽  
pp. 21-33 ◽  
Author(s):  
Hsin-Hsin Shen ◽  
A-Mei Huang ◽  
Jörg Hoheisel ◽  
Shih-Feng Tsai

2009 ◽  
Vol 41 (10) ◽  
pp. 809-815 ◽  
Author(s):  
L. Zhang ◽  
Z. Hu ◽  
C. Zhu ◽  
Q. Liu ◽  
Y. Zhou ◽  
...  

2021 ◽  
Author(s):  
Federica Calzetti ◽  
Giulia Finotti ◽  
Nicola Tamassia ◽  
Francisco Bianchetto-Aguilera ◽  
Monica Castellucci ◽  
...  

We report the identification of human CD66b-CD64dimCD115- neutrophil-committed progenitors within SSClowCD45dim CD34+ and CD34dim/- bone marrow cells, that we named neutrophil myeloblast (NMs). CD34+ and CD34dim/- NMs resulted as either CD45RA+ or CD45RA-, with CD34+ CD45RA- NMs found as selectively expanded in chronic-phase chronic myeloid leukemia patients. By scRNA-seq experiments, CD34+ and CD34dim/- NMs were found to consist of combinations of four cell clusters, characterized by different maturation stages and distributed along two differentiation routes. Cell clusters were identified by neutrophil-specific gene profiles, one of them associated to an interferon-stimulated gene (ISG) signature, hence supporting recently identified expansions of mature neutrophil subsets expressing ISGs in blood of diseased individuals. Altogether, our data shed light on the very early phases of neutrophil ontogeny.


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