Amber

2014 ◽  
Vol 20 ◽  
pp. 163-216 ◽  
Author(s):  
Conrad C. Labandeira

The amber fossil record provides a distinctive, 320-million-year-old taphonomic mode documenting gymnosperm, and later, angiosperm, resin-producing taxa. Resins and their subfossil (copal) and fossilized (amber) equivalents are categorized into five classes of terpenoid, phenols, and other compounds, attributed to extant family-level taxa. Copious resin accumulations commencing during the early Cretaceous are explained by two hypotheses: 1) abundant resin production as a byproduct of plant secondary metabolism, and 2) induced and constitutive host defenses for warding off insect pest and pathogen attack through profuse resin production. Forestry research and fossil wood-boring damage support a causal relationship between resin production and pest attack. Five stages characterize taphonomic conversion of resin to amber: 1) Resin flows initially caused by biotic or abiotic plant-host trauma, then resin flowage results from sap pressure, resin viscosity, solar radiation, and fluctuating temperature; 2) entrapment of live and dead organisms, resulting in 3) entombment of organisms; then 4) movement of resin clumps to 5) a deposition site. This fivefold diagenetic process of amberization results in resin→copal→amber transformation from internal biological and chemical processes and external geological forces. Four phases characterize the amber record: a late Paleozoic Phase 1 begins resin production by cordaites and medullosans. A pre-mid-Cretaceous Mesozoic Phase 2 provides increased but still sparse accumulations of gymnosperm amber. Phase 3 begins in the mid-early Cretaceous with prolific amber accumulation likely caused by biotic effects of an associated fauna of sawflies, beetles, and pathogens. Resiniferous angiosperms emerge sporadically during the late Cretaceous, but promote Phase 4 through their Cenozoic expansion. Throughout Phases 3 and 4, the amber record of trophic interactions involves parasites, parasitoids, and perhaps transmission of diseases, such as malaria. Other recorded interactions are herbivory, predation, pollination, phoresy, and mimicry. In addition to litter, amber also captures microhabitats of wood and bark, large sporocarps, dung, carrion, phytotelmata, and resin substrates. These microhabitats are differentially represented; the primary taphonomic bias is size, and then the sedentary vs. wandering life habits of organisms. Organismic abundance from lekking, ant-refuse heaps, and pest outbreaks additionally contribute to bias. Various techniques are used to image and analyze amber, allowing assessment of: 1) ancient proteins; 2) phylogenetic reconstruction; 3) macroevolutionary patterns; and 4) paleobiogeographic distributions. Three major benefits result from study of amber fossil material, in contrast to three different benefits of compression-impression fossils.

2018 ◽  
Author(s):  
Barbara J Sharanowski ◽  
Leanne Peixoto ◽  
Anamaria Dal Molin ◽  
Andrew R Deans

Ensign wasps (Hymenoptera: Evaniidae) develop as predators of cockroach eggs (Blattodea), have a wide distribution and exhibit numerous interesting biological phenomena. The taxonomy of this lineage has been the subject of several recent, intensive efforts, but the lineage lacked a robust phylogeny. In this paper we present a new phylogeny, based on increased taxonomic sampling and data from six molecular markers (mitochondrial 16S and COI, and nuclear markers 28S, RPS23, CAD, and AM2), the latter used for the first time in phylogenetic reconstruction. Our intent is to provide a robust phylogeny that will stabilize and facilitate revision of the higher-level classification. We also show the continued utility of molecular motifs, especially the presence of an intron in the RPS23 fragments of certain taxa, to diagnose evaniid clades and assist with taxonomic classification. Furthermore, we estimate divergence times among evaniid lineages for the first time, using multiple fossil calibrations. Evaniidae radiated primarily in the Early Cretaceous (134.1-141.1 Mya), with and most extant genera diverging near the K-T boundary. The estimated phylogeny reveals a more robust topology than previous efforts, with the recovery of more monophyletic taxa and better higher-level resolution. The results facilitate a change in ensign wasp taxonomy, with Parevania, syn. nov., and Papatuka, syn. nov. becoming junior synonyms of Zeuxevania, and Acanthinevania, syn. nov. being designated as junior synonym of Szepligetella. We transfer 30 species to Zeuxevania, either reestablishing past combinations or as new combinations. We also transfer 20 species from Acanthinevania to Szepligetella as new combinations.


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6689
Author(s):  
Barbara J. Sharanowski ◽  
Leanne Peixoto ◽  
Anamaria Dal Molin ◽  
Andrew R. Deans

Ensign wasps (Hymenoptera: Evaniidae) develop as predators of cockroach eggs (Blattodea), have a wide distribution and exhibit numerous interesting biological phenomena. The taxonomy of this lineage has been the subject of several recent, intensive efforts, but the lineage lacked a robust phylogeny. In this paper we present a new phylogeny, based on increased taxonomic sampling and data from six molecular markers (mitochondrial16SandCOI, and nuclear markers28S,RPS23,CAD, andAM2), the latter used for the first time in phylogenetic reconstruction. Our intent is to provide a robust phylogeny that will stabilize and facilitate revision of the higher-level classification. We also show the continued utility of molecular motifs, especially the presence of an intron in theRPS23fragments of certain taxa, to diagnose evaniid clades and assist with taxonomic classification. Furthermore, we estimate divergence times among evaniid lineages for the first time, using multiple fossil calibrations. Evaniidae radiated primarily in the Early Cretaceous (134.1–141.1 Mya), with and most extant genera diverging near the K-T boundary. The estimated phylogeny reveals a more robust topology than previous efforts, with the recovery of more monophyletic taxa and better higher-level resolution. The results facilitate a change in ensign wasp taxonomy, withParevania, andPapatuka,syn. nov.becoming junior synonyms ofZeuxevania, andAcanthinevania,syn. nov.being designated as junior synonym ofSzepligetella. We transfer 30 species toZeuxevania, either reestablishing past combinations or as new combinations. We also transfer 20 species fromAcanthinevaniatoSzepligetellaas new combinations.


2009 ◽  
Vol 19 (07) ◽  
pp. 2447-2453 ◽  
Author(s):  
SERGIO RINALDI

The synchronization of metacommunities due to dispersal among patches is analyzed in the case of slow–fast populations. The analysis is performed by studying a standard model with the fast population dispersing when special meteorological conditions are present. This assumption fits very well with the peculiar nature of slow–fast systems and implies that metacommunities synchronize if the slow population accelerates during the outbreak of the fast population. This result shows great potential in the study of marine and fresh-water plankton communities as well as in the study of synchronization of insect-pest outbreaks in forests.


EDIS ◽  
2006 ◽  
Vol 2006 (15) ◽  
Author(s):  
Russell F. Mizell, III

ENY-835, a 3-page illustrated fact sheet by Russell F. Mizell, describes a wood-boring insect pest of American persimmon, which is used as a root-stock for Oriental persimmon production. Includes references. Published by the UF Department of Entomology and Nematology, July 2006. ENY-835/IN669: The Persimmon Borer Sannina uroceriformis Walker, Pest of Persimmon (ufl.edu)


2018 ◽  
Author(s):  
Barbara J Sharanowski ◽  
Leanne Peixoto ◽  
Anamaria Dal Molin ◽  
Andrew R Deans

Ensign wasps (Hymenoptera: Evaniidae) develop as predators of cockroach eggs (Blattodea), have a wide distribution and exhibit numerous interesting biological phenomena. The taxonomy of this lineage has been the subject of several recent, intensive efforts, but the lineage lacked a robust phylogeny. In this paper we present a new phylogeny, based on increased taxonomic sampling and data from six molecular markers (mitochondrial 16S and COI, and nuclear markers 28S, RPS23, CAD, and AM2), the latter used for the first time in phylogenetic reconstruction. Our intent is to provide a robust phylogeny that will stabilize and facilitate revision of the higher-level classification. We also show the continued utility of molecular motifs, especially the presence of an intron in the RPS23 fragments of certain taxa, to diagnose evaniid clades and assist with taxonomic classification. Furthermore, we estimate divergence times among evaniid lineages for the first time, using multiple fossil calibrations. Evaniidae radiated primarily in the Early Cretaceous (134.1-141.1 Mya), with and most extant genera diverging near the K-T boundary. The estimated phylogeny reveals a more robust topology than previous efforts, with the recovery of more monophyletic taxa and better higher-level resolution. The results facilitate a change in ensign wasp taxonomy, with Parevania, syn. nov., and Papatuka, syn. nov. becoming junior synonyms of Zeuxevania, and Acanthinevania, syn. nov. being designated as junior synonym of Szepligetella. We transfer 30 species to Zeuxevania, either reestablishing past combinations or as new combinations. We also transfer 20 species from Acanthinevania to Szepligetella as new combinations.


2019 ◽  
Author(s):  
Amanda K. Garcia ◽  
Hanon McShea ◽  
Bryan Kolaczkowski ◽  
Betül Kaçar

ABSTRACTThe nitrogenase metalloenzyme family, essential for supplying fixed nitrogen to the biosphere, is one of life’s key biogeochemical innovations. The three isozymes of nitrogenase differ in their metal dependence, each binding either a FeMo-, FeV-, or FeFe-cofactor where the reduction of dinitrogen takes place. The history of nitrogenase metal dependence has been of particular interest due to the possible implication that ancient marine metal availabilities have significantly constrained nitrogenase evolution over geologic time. Here, we reconstructed the evolutionary history of nitrogenases, and combined phylogenetic reconstruction, ancestral sequence inference, and structural homology modeling to evaluate the potential metal dependence of ancient nitrogenases. We find that active-site sequence features can reliably distinguish extant Mo-nitrogenases from V- and Fe-nitrogenases, and that inferred ancestral sequences at the deepest nodes of the phylogeny suggest these ancient proteins most resemble modern Mo-nitrogenases. Taxa representing early-branching nitrogenase lineages lack one or more biosynthetic nifE and nifN genes that both contribute to the assembly of the FeMo-cofactor in studied organisms, suggesting that early Mo-nitrogenases may have utilized an alternate and/or simplified pathway for cofactor biosynthesis. Our results underscore the profound impacts that protein-level innovations likely had on shaping global biogeochemical cycles throughout the Precambrian, in contrast to organism-level innovations that characterize the Phanerozoic Eon.


PLoS ONE ◽  
2016 ◽  
Vol 11 (12) ◽  
pp. e0167284 ◽  
Author(s):  
Amanda R. Falk ◽  
Thomas G. Kaye ◽  
Zhonghe Zhou ◽  
David A. Burnham

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