Determination of DNA Melting Temperatures in Diffusion-Generated Chemical Gradients

2007 ◽  
Vol 79 (14) ◽  
pp. 5212-5216 ◽  
Author(s):  
Tim Liedl ◽  
Friedrich C. Simmel
2009 ◽  
Vol 106 (6) ◽  
pp. 063524 ◽  
Author(s):  
N. Scott Weingarten ◽  
William D. Mattson ◽  
Betsy M. Rice

Biopolymers ◽  
2009 ◽  
Vol 91 (1) ◽  
pp. 85-94 ◽  
Author(s):  
Madhusudan K. Vasudevamurthy ◽  
Michael Lever ◽  
Peter M. George ◽  
Ken R. Morison

2014 ◽  
Vol 2014 ◽  
pp. 1-5 ◽  
Author(s):  
Elena V. Chikhirzhina ◽  
Starkova J. Tatiana ◽  
Alexander M. Polyanichko

Interaction of HMGB1 nonhistone chromosomal protein with DNA was studied using circular dichroism spectroscopy and thermal denaturation of DNA. Melting DNA in the complex was shown to be a biphasic process. The characteristic melting temperatures of unbound DNA and the DNA bound to HMGB1 in 0.25 mM EDTA solutions were found to beTmI=44.0±0.5°C andTmII=62.0±1°C, respectively. It was shown that the binding of the HMGB1 molecule affects the melting of the DNA region approximately 30 b.p. long.


Minerals ◽  
2020 ◽  
Vol 10 (2) ◽  
pp. 126 ◽  
Author(s):  
Zhicheng Jing ◽  
Tony Yu ◽  
Man Xu ◽  
Julien Chantel ◽  
Yanbin Wang

Sound velocity and equation of state of liquids provide important constraints on the generation, presence, and transport of silicate and metallic melts in the Earth’s interior. Unlike their solid counterparts, these properties of liquids pose great technical challenges to high-pressure measurements and are poorly constrained. Here we present the technical developments that have been made at the GSECARS beamline 13-ID-D of the Advanced Photon Source for the past several years for determination of sound velocity of liquids using the ultrasonic techniques in a 1000-ton Kawai-type multianvil apparatus. Temperature of the sound velocity measurements has been extended to ~2400 K at 4 GPa and ~2000 K at 8 GPa to enable studies of liquids with very high melting temperatures, such as the silicate liquids.


1992 ◽  
Vol 70 (11) ◽  
pp. 2745-2750 ◽  
Author(s):  
François Quirion ◽  
Daniel Lambert ◽  
Gérald Perron

A simple method of thermal analysis is described which gives the same information as differential scanning calorimetry. The method is based on the Heat-Leak-Modulus, HLM, of a sample cell placed in a constant temperature reservoir. In the present study, the HLM method is used for the investigation of pure components and mixtures from −190 to 50 °C. The method allows the determination of glass-transition, crystallizations, solid–solid transition, eutectic, and melting temperatures with a reproducibility better than ±0.1 °C. The enthalpy of a transition can be determined with a reproducibility of ±5%. The simplicity, the low cost, and the precision of the HLM method fills the gap between standard cooling curves and sophisticated differential scanning calorimetry experiments. The HLM method has numerous applications in physical chemistry, polymer science, metallurgy, and chemical engineering.


Sensors ◽  
2022 ◽  
Vol 22 (2) ◽  
pp. 500
Author(s):  
Joanna Kosman ◽  
Krzysztof Żukowski ◽  
Andrea Csáki ◽  
Wolfgang Fritzsche ◽  
Bernard Juskowiak

In this work we investigated the effect of a DNA oligonucleotide sequence on the activity of a DNAzyme with covalently attached hemin. For this purpose, we synthesized seven DNA-hemin conjugates. All DNA-hemin conjugates as well as DNA/hemin complexes were characterized using circular dichroism, determination of melting temperatures and pKa of hemin. We observed that hemin conjugation in most cases led to the formation of parallel G-quadruplexes in the presence of potassium and increased thermal stability of all studied systems. Although the activity of DNA-hemin conjugates depended on the sequence used, the highest activity was observed for the DNA-hemin conjugate based on a human telomeric sequence. We used this DNAzyme for development of “sandwich” assay for detection of DNA sequence. For this assay, we used electric chip which could conduct electricity after silver deposition catalyzed by DNAzyme. This method was proved to be selective towards DNA oligonucleotides with mismatches and could be used for the detection of the target. To prove the versatility of our DNAzyme probe we also performed experiments with streptavidin-coated microplates. Our research proved that DNAzyme with covalently attached hemin can be used successfully in the development of heterogeneous assays.


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