scholarly journals Systematic Optimization of a Fragment-Based Force Field against Experimental Pure-Liquid Properties Considering Large Compound Families: Application to Saturated Haloalkanes

2020 ◽  
Vol 16 (12) ◽  
pp. 7525-7555
Author(s):  
Marina P. Oliveira ◽  
Maurice Andrey ◽  
Salomé R. Rieder ◽  
Leyla Kern ◽  
David F. Hahn ◽  
...  
Author(s):  
Marina Pereira Oliveira ◽  
Philippe Hunenberger

The CombiFF approach is a workflow for the automated refinement of force-field parameters against experimental condensed-phase data, considering entire classes of organic molecules constructed using a fragment library via combinatorial...


2015 ◽  
Vol 17 (38) ◽  
pp. 24851-24865 ◽  
Author(s):  
Nicola Jane Boyd ◽  
Mark R. Wilson

Systematic optimization of the General Amber Force Field (GAFF) for mesogenic fragments leads to a dramatic improvement in the modelling of liquid crystal clearing points.


2021 ◽  
Author(s):  
Aditya Kulkarni ◽  
Edder J. García ◽  
Angelo Damone ◽  
Michael Schappals ◽  
Simon Stephan ◽  
...  

A united atom force field for the homologous series of the poly(oxymethylene)dimethyl ethers (OMEn): H3C–O–(CH2O)n–CH3, is presented. OMEn are oxygenatesand promising new synthetic fuels and solvents. The molecular geometry of the OMEn,the internal degrees of freedom and their electrostatic properties were obtained fromquantum mechanical calculations. To model repulsion and dispersion, Lennard-Jonesparameters were fitted to the experimental liquid densities and vapour pressures of pureOMEn (n “ 1 - 4). The critical properties of OMEn (n “ 1 - 4) were determined fromthe simulation data. Additionally, the shear viscosity of pure liquid OMEn is evaluatedand compared with literature data. Finally, the solubility of CO2 in OME2, OME3and OME4 is predicted using a literature model for CO2 and the Lorentz-Berthelotcombining rules. The results agree well with experimental data from the literature.


2021 ◽  
Author(s):  
Simon Boothroyd ◽  
Owen Madin ◽  
David Mobley ◽  
Lee-Ping Wang ◽  
John Chodera ◽  
...  

Developing a sufficiently accurate classical force field representation of molecules is key to realizing the full potential of molecular simulation as a route to gaining fundamental insight into a broad spectrum of chemical and biological phenomena. This is only possible, however, if the many complex interactions between molecules of different species in the system are accurately captured by the model. Historically, the intermolecular van der Waals (vdW) interactions have primarily been trained against densities and enthalpies of vaporization of pure (single-component) systems, with occasional usage of hydration free energies. In this study, we demonstrate how including physical property data of binary mixtures can better inform these parameters, encoding more information about the underlying physics of the system in complex chemical mixtures. To demonstrate this, we re-train a select number of the Lennard-Jones parameters describing the vdW interactions of the OpenFF 1.0.0 (Parsley) fixed charge force field against training sets composed of densities and enthalpies of mixing for binary liquid mixtures as well as densities and enthalpies of vaporization of pure liquid systems, and assess the performance of each of these combinations. We show that retraining against the mixture data almost universally improves the force field's ability to reproduce both pure and mixture properties, reducing some systematic errors that exist when training vdW interactions against properties of pure systems only.


2021 ◽  
Author(s):  
Simon Boothroyd ◽  
Owen Madin ◽  
David Mobley ◽  
Lee-Ping Wang ◽  
John Chodera ◽  
...  

Developing a sufficiently accurate classical force field representation of molecules is key to realizing the full potential of molecular simulation as a route to gaining fundamental insight into a broad spectrum of chemical and biological phenomena. This is only possible, however, if the many complex interactions between molecules of different species in the system are accurately captured by the model. Historically, the intermolecular van der Waals (vdW) interactions have primarily been trained against densities and enthalpies of vaporization of pure (single-component) systems, with occasional usage of hydration free energies. In this study, we demonstrate how including physical property data of binary mixtures can better inform these parameters, encoding more information about the underlying physics of the system in complex chemical mixtures. To demonstrate this, we re-train a select number of the Lennard-Jones parameters describing the vdW interactions of the OpenFF 1.0.0 (Parsley) fixed charge force field against training sets composed of densities and enthalpies of mixing for binary liquid mixtures as well as densities and enthalpies of vaporization of pure liquid systems, and assess the performance of each of these combinations. We show that retraining against the mixture data almost universally improves the force field's ability to reproduce both pure and mixture properties, reducing some systematic errors that exist when training vdW interactions against properties of pure systems only.


1997 ◽  
Vol 90 (3) ◽  
pp. 495-497
Author(s):  
CLAUDIO ESPOSTI ◽  
FILIPPO TAMASSIA ◽  
CRISTINA PUZZARINI ◽  
RICCARDO TARRONI ◽  
ZDENEK ZELINGER

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