scholarly journals Retraction of “Rationalizing the pH–Activity Response of Escherichia coli Glycinamide Ribonucleotide Transformylase through Computational Methods”

2020 ◽  
Vol 124 (24) ◽  
pp. 5091-5091
Author(s):  
Pancham Lal Gupta ◽  
Adrian E. Roitberg
PROTEOMICS ◽  
2011 ◽  
Vol 11 (7) ◽  
pp. 1213-1227 ◽  
Author(s):  
Mee-Jung Han ◽  
Hongseok Yun ◽  
Jeong Wook Lee ◽  
Yu Hyun Lee ◽  
Sang Yup Lee ◽  
...  

1992 ◽  
Vol 227 (1) ◽  
pp. 283-292 ◽  
Author(s):  
Ping Chen ◽  
Ursula Schulze-Gahmen ◽  
Enrico A. Stura ◽  
James Inglese ◽  
Dana L. Johnson ◽  
...  

Biochemistry ◽  
1990 ◽  
Vol 29 (6) ◽  
pp. 1436-1443 ◽  
Author(s):  
James Inglese ◽  
Dana L. Johnson ◽  
Stephen J. Benkovic ◽  
Alan Shiau ◽  
John M. Smith

Author(s):  
G. Stöffler ◽  
R.W. Bald ◽  
J. Dieckhoff ◽  
H. Eckhard ◽  
R. Lührmann ◽  
...  

A central step towards an understanding of the structure and function of the Escherichia coli ribosome, a large multicomponent assembly, is the elucidation of the spatial arrangement of its 54 proteins and its three rRNA molecules. The structural organization of ribosomal components has been investigated by a number of experimental approaches. Specific antibodies directed against each of the 54 ribosomal proteins of Escherichia coli have been performed to examine antibody-subunit complexes by electron microscopy. The position of the bound antibody, specific for a particular protein, can be determined; it indicates the location of the corresponding protein on the ribosomal surface.The three-dimensional distribution of each of the 21 small subunit proteins on the ribosomal surface has been determined by immuno electron microscopy: the 21 proteins have been found exposed with altogether 43 antibody binding sites. Each one of 12 proteins showed antibody binding at remote positions on the subunit surface, indicating highly extended conformations of the proteins concerned within the 30S ribosomal subunit; the remaining proteins are, however, not necessarily globular in shape (Fig. 1).


Author(s):  
Manfred E. Bayer

Bacterial viruses adsorb specifically to receptors on the host cell surface. Although the chemical composition of some of the cell wall receptors for bacteriophages of the T-series has been described and the number of receptor sites has been estimated to be 150 to 300 per E. coli cell, the localization of the sites on the bacterial wall has been unknown.When logarithmically growing cells of E. coli are transferred into a medium containing 20% sucrose, the cells plasmolize: the protoplast shrinks and becomes separated from the somewhat rigid cell wall. When these cells are fixed in 8% Formaldehyde, post-fixed in OsO4/uranyl acetate, embedded in Vestopal W, then cut in an ultramicrotome and observed with the electron microscope, the separation of protoplast and wall becomes clearly visible, (Fig. 1, 2). At a number of locations however, the protoplasmic membrane adheres to the wall even under the considerable pull of the shrinking protoplast. Thus numerous connecting bridges are maintained between protoplast and cell wall. Estimations of the total number of such wall/membrane associations yield a number of about 300 per cell.


Author(s):  
Manfred E. Bayer

The first step in the infection of a bacterium by a virus consists of a collision between cell and bacteriophage. The presence of virus-specific receptors on the cell surface will trigger a number of events leading eventually to release of the phage nucleic acid. The execution of the various "steps" in the infection process varies from one virus-type to the other, depending on the anatomy of the virus. Small viruses like ØX 174 and MS2 adsorb directly with their capsid to the bacterial receptors, while other phages possess attachment organelles of varying complexity. In bacteriophages T3 (Fig. 1) and T7 the small conical processes of their heads point toward the adsorption site; a welldefined baseplate is attached to the head of P22; heads without baseplates are not infective.


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