Three-dimensional model and molecular dynamics simulation of the active site of the self-splicing intervening sequence of the bacteriophage T4 nrdB messenger RNA

Biochemistry ◽  
1990 ◽  
Vol 29 (45) ◽  
pp. 10317-10322 ◽  
Author(s):  
Lennart Nilsson ◽  
Agneta Aahgren-Staalhandske ◽  
Ann Sofie Sjoegren ◽  
Solveig Hahne ◽  
Britt Marie Sjoeberg
Keyword(s):  
Molecular Dynamics ◽  
Active Site ◽  
Messenger Rna ◽  
Bacteriophage T4 ◽  
Three Dimensional ◽  
The Self ◽  
Dynamics Simulation ◽  
Dimensional Model ◽  
Three Dimensional Model ◽  
Self Splicing

AFM-Based Nanoscratching: A 3D Molecular Dynamics Simulation With Experimental Verification

2014 ◽  
Author(s):  
Rapeepan Promyoo ◽  
Hazim El-Mounayri ◽  
Kody Varahramyan
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Md Simulation ◽  
Three Dimensional ◽  
Dynamics Simulation ◽  
Dimensional Model ◽  
Gold Substrate ◽  
Three Dimensional Model ◽  
Friction Forces ◽  
Defect Mechanism

In this paper, a developed three-dimensional model for AFM-based nanomachining is applied to study mechanical scratching at the nanoscale. The correlation between the scratching conditions, including applied force, scratching depth, and distant between any two scratched grooves, and the defect mechanism in the substrate/workpiece is investigated. The simulations of nanoscratching process are performed on different crystal orientations of single-crystal gold substrate, Au(100), Au(110), and Au(111). The material deformation and groove geometry are extracted from the final locations of atoms, which are displaced by the rigid indenter. The simulation also allows for the prediction of normal and friction forces at the interface between the indenter and substrate. An AFM is used to conduct actual scratching at the nanoscale, and provide measurements to which the MD simulation predictions are compared. The predicted forces obtained from MD simulation compares qualitatively with the experimental results.

Dynamic Simulation Analysis of the Crane Hoisting Process Based on Adams

2014 ◽  
Vol 940 ◽  
pp. 132-135 ◽  
Author(s):  
Yi Fan Zhao ◽  
Ling Sha ◽  
Yi Zhu
Keyword(s):  
Dynamic Simulation ◽  
Simulation Analysis ◽  
Three Dimensional ◽  
Wire Rope ◽  
Dynamics Simulation ◽  
Dimensional Model ◽  
Analysis Model ◽  
Three Dimensional Model ◽  
Adams Software ◽  
Simulation Results

Established the dynamics simulation analysis model of crane hoisting mechanism based on the theory of dynamics in Adams software, and then through the three dimensional model of lifting mechanism dynamics entities, the constraints, load, drive can be added, the motion law can be defined to simulation analysis the change of the force of wire rope, the change of displacement, velocity and acceleration of lifting weight in the lifting process. On the basis of the simulation results, it can make a great improvement for the structure of crane and provide a meaningful theoretical reference for the hoisting machinery innovation design.

Design and Simulation Analysis of the Manipulator Used to Feed Gems

2013 ◽  
Vol 364 ◽  
pp. 365-369
Author(s):  
Xiao Lin Deng ◽  
Heng Bing Wei
Keyword(s):  
Simulation Analysis ◽  
Three Dimensional ◽  
Dynamics Simulation ◽  
Kinematics And Dynamics ◽  
Prototype Model ◽  
Dimensional Model ◽  
Three Dimensional Model ◽  
Adams Software ◽  
Working Principle ◽  
Design Requirements

This paper studies and designs the gems feeding manipulator, makes a detailed analysis of the overall structure and working principle of the manipulator, and establishes the three-dimensional model of the manipulator. The virtual prototype model of the manipulator is built in ADAMS software. Use simulation analysis functions of ADAMS to carry out kinematics and dynamics simulation analysis on manipulator, obtaining parameter curves of the manipulator such as position, speed and torque, which verifies it feasible to use manipulator to unload and load gems, achieving the design requirements.

CAD Analysis Applied to Self-Centering Compliant Grippers

2013 ◽  
Vol 325-326 ◽  
pp. 305-309 ◽  
Author(s):  
Stergios Ganatsios ◽  
Alina Spanu ◽  
Octavian Dontu ◽  
Daniel Besnea ◽  
Gheorghe I. Gheorghe
Keyword(s):  
Elastic Properties ◽  
Three Dimensional ◽  
The Self ◽  
Experimental Results ◽  
Dimensional Model ◽  
Three Dimensional Model ◽  
Positioning Accuracy ◽  
Compliant Joints ◽  
Fem Method ◽  
Object Movement

The self centering grasping mechanisms aim to improve the positioning accuracy of the object movement. The paper presents the FEM method applied to such mechanism using compliant joints with elastic properties. We have studied the tensions and displacements for the three dimensional model and the experimental results achieved the goal of our work.

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