scholarly journals Demonstration and origin of six tertiary base pair resonances in the NMR spectrum of E. coli tRNAVal1

Nature ◽  
1975 ◽  
Vol 257 (5524) ◽  
pp. 287-291 ◽  
Author(s):  
Brian R. Reid ◽  
George T. Robillard
Keyword(s):  
Nature ◽  
1974 ◽  
Vol 252 (5485) ◽  
pp. 738-739 ◽  
Author(s):  
K. LIM WONG ◽  
DAVID R. KEARNS
Keyword(s):  

FEBS Letters ◽  
1996 ◽  
Vol 385 (1-2) ◽  
pp. 15-20 ◽  
Author(s):  
Stefan Limmera ◽  
Bernd Reifa ◽  
Günther otta ◽  
Lubos Arnold ◽  
Mathias Sprinzl
Keyword(s):  
E Coli ◽  

2018 ◽  
Vol 115 (29) ◽  
pp. 7527-7532 ◽  
Author(s):  
Yeeting E. Chong ◽  
Min Guo ◽  
Xiang-Lei Yang ◽  
Bernhard Kuhle ◽  
Masahiro Naganuma ◽  
...  

Throughout three domains of life, alanyl-tRNA synthetases (AlaRSs) recognize a G3:U70 base pair in the acceptor stem of tRNAAla as the major identity determinant of tRNAAla. The crystal structure of the archaeon Archaeoglobus fulgidus AlaRS in complex with tRNAAla provided the basis for G3:U70 recognition with residues (Asp and Asn) that are conserved in the three domains [Naganuma M, et al. (2014) Nature 510:507–511]. The recognition mode is unprecedented, with specific accommodation of the dyad asymmetry of the G:U wobble pair and exclusion of the dyad symmetry of a Watson–Crick pair. With this conserved mode, specificity is based more on “fit” than on direct recognition of specific atomic groups. Here, we show that, in contrast to the archaeal complex, the Escherichia coli enzyme uses direct positive (energetically favorable) minor groove recognition of the unpaired 2-amino of G3 by Asp and repulsion of a competing base pair by Asn. Strikingly, mutations that disrupted positive recognition by the E. coli enzyme had little or no effect on G:U recognition by the human enzyme. Alternatively, Homo sapiens AlaRS selects G:U without positive recognition and uses Asp instead to repel a competitor. Thus, the widely conserved Asp-plus-Asn architecture of AlaRSs can select G:U in a straightforward (bacteria) or two different unconventional (eukarya/archaea) ways. The adoption of different modes for recognition of a widely conserved G:U pair in alanine tRNAs suggests an early and insistent role for G:U in the development of the genetic code.


2019 ◽  
Vol 12 ◽  
pp. 117863611986523
Author(s):  
Jamie Jeffries ◽  
Gerald G Fuller ◽  
Lynette Cegelski

Bacterial biofilms are complex, multicellular communities made up of bacteria enmeshed in a self-produced extracellular matrix (ECM) that protects against environmental stress. The ECM often comprises insoluble components, which complicates the study of biofilm composition, structure, and function. Wrinkled, agar-grown Escherichia coli biofilms require 2 insoluble macromolecules: curli amyloid fibers and cellulosic polymers. We quantified these components with solid-state nuclear magnetic resonance (NMR) and determined that curli contributed 85% of the isolated uropathogenic E coli ECM dry mass. The remaining 15% was cellulosic, but, surprisingly, was not ordinary cellulose. We tracked the identity of the unanticipated peak in the 13C NMR spectrum of the cellulosic component and discovered that E coli secrete phosphoethanolamine (pEtN)-modified cellulose. Cellulose is the most abundant biopolymer on the planet, and this marked the first identification of a naturally, chemically modified cellulose. To investigate potential roles of pEtN cellulose, we customized a newly designed live-cell monolayer rheometer and demonstrated that pEtN cellulose facilitated E coli attachment to bladder epithelial cells and acted as a glue, keeping curli cell associated. The discovery of pEtN cellulose opens questions regarding its biological function(s) and provides opportunities in materials science to explore this newly discovered biopolymer.


1990 ◽  
Vol 10 (5) ◽  
pp. 461-467
Author(s):  
Hans-Jürg Monstein

A 1000 base pair cDNA coding for the entire human proenkephalin A(proA) polypeptide was subcloned into the multifunctional pMPV 2911/M E. coli vector. The recombinant plasmid was found to express an approximately 30 kDa prohormone, which was recognized by a Met-Arg6-Phe2 antibody, directed against the C-terminal part of the enkephalin A prohormone. The expression of human proenkephalin A cDNA should thus permit the rapid purification of unfused recombinant enkephalin A prohormone, which itself may provide a model substrat to identify endoproteolytic processing activities.


2021 ◽  
pp. 167147
Author(s):  
Linxuan Hao ◽  
Rui Zhang ◽  
Timothy M. Lohman
Keyword(s):  

1991 ◽  
Vol 11 (5) ◽  
pp. 2744-2751 ◽  
Author(s):  
V Trézéguet ◽  
H Edwards ◽  
P Schimmel

The Escherichia coli su+3 tyrosine tRNA was shown recently to be a leucine-specific tRNA in Saccharomyces cerevisiae. This finding raises the possibility that some determinants for tRNA identity in E. coli may be different in S. cerevisiae. To investigate whether the fungal system is sensitive to the major determinant for alanine acceptance in E. coli, a single G3 . U70 base pair was introduced into the acceptor helix of the su+3 tyrosine tRNA. This substitution converts the identity of the E. coli suppressor in S. cerevisiae from leucine to alanine. Thus, as in E. coli, G3 . U70 is a strong determinant for alanine acceptance that can dominate over other features in a tRNA that might be recognized by alternative charging enzymes.


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