scholarly journals Tools for engineering coordinated system behaviour in synthetic microbial consortia

2018 ◽  
Vol 9 (1) ◽  
Author(s):  
Nicolas Kylilis ◽  
Zoltan A. Tuza ◽  
Guy-Bart Stan ◽  
Karen M. Polizzi
2017 ◽  
Author(s):  
Nicolas Kylilis ◽  
Guy-Bart Stan ◽  
Karen M Polizzi

AbstractAdvancing synthetic biology to the multicellular level requires the development of multiple orthogonal cell-to-cell communication channels to propagate information with minimal signal interference. The development of quorum sensing devices, the cornerstone technology for building microbial communities with coordinated system behaviour, has largely focused on reducing signal leakage between systems of cognate AHL/transcription factor pairs. However, the use of non-cognate signals as a design feature has received limited attention so far. Here, we demonstrate the largest library of AHL-receiver devices constructed to date with all cognate and non-cognate chemical signal interactions quantified and we develop a software tool that allows automated selection of orthogonal chemical channels. We use this approach to identify up to four orthogonal channels in silico and experimentally demonstrate the simultaneous use of three channels in co-culture. The development of multiple non-interfering cell-to-cell communication channels will facilitate the design of synthetic microbial consortia for novel applications including distributed bio-computation, increased bioprocess efficiency, cell specialisation, and spatial organisation.


RSC Advances ◽  
2016 ◽  
Vol 6 (81) ◽  
pp. 78161-78169 ◽  
Author(s):  
Jiajun Hu ◽  
Yiyun Xue ◽  
Jixiang Li ◽  
Lei Wang ◽  
Shiping Zhang ◽  
...  

CO2 fixation efficiency of the devised synthetic microbial consortia with both autotrophic–autotrophic and autotrophic–heterotrophic microbial interactions were higher than the sum of theoretical CO2 fixation efficiency of the microbial components.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Razan N. Alnahhas ◽  
Mehdi Sadeghpour ◽  
Ye Chen ◽  
Alexis A. Frey ◽  
William Ott ◽  
...  

2019 ◽  
Vol 49 ◽  
pp. 52-59 ◽  
Author(s):  
Jorge F. Vázquez-Castellanos ◽  
Anaïs Biclot ◽  
Gino Vrancken ◽  
Geert RB Huys ◽  
Jeroen Raes

2012 ◽  
Vol 23 (5) ◽  
pp. 798-802 ◽  
Author(s):  
Jasmine Shong ◽  
Manuel Rafael Jimenez Diaz ◽  
Cynthia H Collins

2016 ◽  
Vol 1 (2) ◽  
pp. 109-117 ◽  
Author(s):  
Xiaoqiang Jia ◽  
Chang Liu ◽  
Hao Song ◽  
Mingzhu Ding ◽  
Jin Du ◽  
...  

Author(s):  
Sally Wang ◽  
Gregory F. Payne ◽  
William E. Bentley

Quorum sensing (QS) is a molecular signaling modality that mediates molecular-based cell–cell communication. Prevalent in nature, QS networks provide bacteria with a method to gather information from the environment and make decisions based on the intel. With its ability to autonomously facilitate both inter- and intraspecies gene regulation, this process can be rewired to enable autonomously actuated, but molecularly programmed, genetic control. On the one hand, novel QS-based genetic circuits endow cells with smart functions that can be used in many fields of engineering, and on the other, repurposed QS circuitry promotes communication and aids in the development of synthetic microbial consortia. Furthermore, engineered QS systems can probe and intervene in interkingdom signaling between bacteria and their hosts. Lastly, QS is demonstrated to establish conversation with abiotic materials, especially by taking advantage of biological and even electronically induced assembly processes; such QS-incorporated biohybrid devices offer innovative ways to program cell behavior and biological function.


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