Metal ions modulate the conformation and stability of a G-quadruplex with or without a small-molecule ligand

Metallomics ◽  
2015 ◽  
Vol 7 (11) ◽  
pp. 1508-1514 ◽  
Author(s):  
Huiru Lu ◽  
Shenghui Li ◽  
Jun Chen ◽  
Jing Xia ◽  
Jinchao Zhang ◽  
...  
2011 ◽  
Author(s):  
Gary N. Parkinson ◽  
Mekala Gunaratnam ◽  
Xiong Wei Li ◽  
Gavin Collie ◽  
Anthony P. Reszka ◽  
...  

2013 ◽  
Vol 69 (10) ◽  
pp. 1865-1866 ◽  
Author(s):  
Mariusz Jaskolski

The policy of the Protein Data Bank (PDB) that the first deposition of a small-molecule ligand, even with erroneous atom numbering, sets a precedent over accepted nomenclature rules is disputed. Recommendations regarding ligand molecules in the PDB are suggested.


ChemistryOpen ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 1236-1250
Author(s):  
Alice Pomeislová ◽  
Lukáš Vrzal ◽  
Jaroslav Kozák ◽  
Juraj Dobiaš ◽  
Martin Hubálek ◽  
...  
Keyword(s):  

2020 ◽  
Vol 49 (37) ◽  
pp. 13160-13166
Author(s):  
Yali Yu ◽  
Qingqing Zhang ◽  
Heng Gao ◽  
Chenxiao Yan ◽  
Xiong Zheng ◽  
...  

Metal ion-coordinated G-quadruplexes were first demonstrated to behave like metalloenzymes using directly complexed metal ions as the active centers.


Molecules ◽  
2019 ◽  
Vol 24 (8) ◽  
pp. 1578 ◽  
Author(s):  
Guanhui Wu ◽  
Luying Chen ◽  
Wenting Liu ◽  
Danzhou Yang

G-quadruplex (G4) DNA secondary structures formed in human telomeres have been shown to inhibit cancer-specific telomerase and alternative lengthening of telomere (ALT) pathways. Thus, human telomeric G-quadruplexes are considered attractive targets for anticancer drugs. Human telomeric G-quadruplexes are structurally polymorphic and predominantly form two hybrid-type G-quadruplexes, namely hybrid-1 and hybrid-2, under physiologically relevant solution conditions. To date, only a handful solution structures are available for drug complexes of human telomeric G-quadruplexes. In this review, we will describe two recent solution structural studies from our labs. We use NMR spectroscopy to elucidate the solution structure of a 1:1 complex between a small molecule epiberberine and the hybrid-2 telomeric G-quadruplex, and the structures of 1:1 and 4:2 complexes between a small molecule Pt-tripod and the hybrid-1 telomeric G-quadruplex. Structural information of small molecule complexes can provide important information for understanding small molecule recognition of human telomeric G-quadruplexes and for structure-based rational drug design targeting human telomeric G-quadruplexes.


Author(s):  
Buket Onel ◽  
Prashansa Agrawal ◽  
Megan Carver ◽  
Robert Brown ◽  
Laurence Hurley ◽  
...  
Keyword(s):  

2016 ◽  
Author(s):  
Elena C. Leon ◽  
John K. Simmons ◽  
David Calabrese ◽  
Wendy DuBois ◽  
Kenneth Felsenstein ◽  
...  

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