Identification of key residues for protein conformational transition using elastic network model

2011 ◽  
Vol 135 (17) ◽  
pp. 174101 ◽  
Keyword(s):  
Network Model ◽  
Conformational Transition ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Key Residues

Identification of functionally key residues in maltose transporter with an elastic network model-based thermodynamic method

2016 ◽  
Vol 114 (22) ◽  
pp. 3407-3417
Author(s):  
Dashuai Lv ◽  
Chunhua Li ◽  
Jianjun Tan ◽  
Xiaoyi Zhang ◽  
Cunxin Wang ◽  
...  
Keyword(s):  
Network Model ◽  
Thermodynamic Method ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Model Based ◽  
Maltose Transporter ◽  
Key Residues

scholarly journals Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model

2016 ◽  
Vol 145 (1) ◽  
pp. 014104 ◽  
Author(s):  
Chunhua Li ◽  
Dashuai Lv ◽  
Lei Zhang ◽  
Feng Yang ◽  
Cunxin Wang ◽  
...  
Keyword(s):  
Network Model ◽  
Coarse Grained ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Folding Dynamics

scholarly journals Generalization of the elastic network model for the study of large conformational changes in biomolecules

2018 ◽  
Vol 20 (25) ◽  
pp. 17020-17028 ◽  
Author(s):  
Adolfo B. Poma ◽  
Mai Suan Li ◽  
Panagiotis E. Theodorakis
Keyword(s):  
Network Model ◽  
Conformational Changes ◽  
Elastic Network Model ◽  
Elastic Network

The generalized elastic network (GEN) model enables the study of large conformational changes in proteins.

A complex multiscale virtual particle model based elastic network model (CMVP-ENM) for the normal mode analysis of biomolecular complexes

2019 ◽  
Vol 21 (8) ◽  
pp. 4359-4366 ◽  
Author(s):  
D. Vijay Anand ◽  
Zhenyu Meng ◽  
Kelin Xia
Keyword(s):  
Normal Mode ◽  
Network Model ◽  
Material Properties ◽  
Normal Mode Analysis ◽  
Mode Analysis ◽  
Particle Model ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Virtual Particle ◽  
Biomolecular Complexes

The CMVP-ENM for virus normal mode analysis. With a special ratio parameter, CMVP-ENM can characterize the multi-material properties of biomolecular complexes and systematically enhance or suppress the modes for different components.

Sign in / Sign up

Export Citation Format

Share Document