scholarly journals Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster

2007 ◽  
Vol 104 (27) ◽  
pp. 11340-11345 ◽  
Author(s):  
C. M. Bergman ◽  
D. Bensasson
Genetics ◽  
1997 ◽  
Vol 146 (1) ◽  
pp. 253-262 ◽  
Author(s):  
Alexei V Tulin ◽  
Galina L Kogan ◽  
Dominik Filipp ◽  
Maria D Balakireva ◽  
Vladimir A Gvozdev

The 30-kb cluster comprising close to 20 copies of tandemly repeated Stellate genes was localized in the distal heterochromatin of the X chromosome. Of 10 sequenced genes, nine contain undamaged open reading frames with extensive similarity to protein kinase CK2 β-subunit; one gene is interrupted by an insertion. The heterochromatic array of Stellate repeats is divided into three regions by a 4.5-kb DNA segment of unknown origin and a retrotransposon insertion: the A region (∼14 Stellate genes), the adjacent B region (approximately three Stellate genes), and the C region (about four Stellate genes). The sequencing of Stellate copies located along the discontinuous cluster revealed a complex pattern of diversification. The lowest level of divergence was detected in nearby Stellate repeats. The marginal copies of the A region, truncated or interrupted by an insertion, escaped homogenization and demonstrated high levels of divergence. Comparison of copies in the B and C regions, which are separated by a retrotransposon insertion, revealed a high level of diversification. These observations suggest that homogenization takes place in the Stellate cluster, but that inserted sequences may impede this process.


2010 ◽  
Vol 283 (5) ◽  
pp. 503-509 ◽  
Author(s):  
Crescenzio Francesco Minervini ◽  
Simona Ruggieri ◽  
Michele Traversa ◽  
Leonardo D’Aiuto ◽  
Rene’ Massimiliano Marsano ◽  
...  

Caryologia ◽  
2018 ◽  
Vol 71 (1) ◽  
pp. 85-92 ◽  
Author(s):  
F. Mascagni ◽  
G. Usai ◽  
L. Natali ◽  
A. Cavallini ◽  
T. Giordani

2019 ◽  
Vol 39 (3) ◽  
pp. 393-408
Author(s):  
Chuan Li ◽  
Jin Tang ◽  
Zhaoyong Hu ◽  
Jingwen Wang ◽  
Tao Yu ◽  
...  

Genetica ◽  
2008 ◽  
Vol 135 (2) ◽  
pp. 137-148 ◽  
Author(s):  
Paraskeva Michailova ◽  
Julia Ilkova ◽  
Tom Hankeln ◽  
Erwin R. Schmidt ◽  
Anna Selvaggi ◽  
...  

2019 ◽  
Author(s):  
Jia Liu ◽  
Rijin Zhou ◽  
Wenxiang Wang ◽  
Hui Wang ◽  
Yu Qiu ◽  
...  

AbstractSeed loss resulting from pod shattering is a major problem in oilseed rape (Brassica napus L.) production worldwide. However, the molecular mechanisms underlying pod shatter resistance are not well understood. Here we show that the pod shatter resistance at quantitative trait locus, qSRI.A9.1 is controlled by a SHATTERPROOF1 (SHP1) paralog in B. napus (BnSHP1.A9). Expression analysis by quantitative RT-PCR showed that BnSHP1.A9 was specifically expressed in flower buds, flowers and developing siliques in the oilseed rape line (R1) carrying the qSRI.A9.1 allele with negative effect, but not expressed in any tissue of the line (R2) carrying the positive effect qSRI.A9.1 allele. Transgenic plants constitutively expressing BnSHP1.A9 alleles from pod resistant and pod shattering parental lines showed that both alleles are responsible for pod shattering via promoting lignification of enb layer, which indicated allelic difference of BnSHP1.A9 gene per se is not the causal factor of the QTL. The upstream sequence of BnSHP1.A9 in the promotor region harboring highly methylated long terminal repeat retrotransposon insertion (LTR, 4803bp) in R2 repressed the expression of BnSHP.A9, and thus contributed to the positive effect on pod shatter resistance. Genetic and association analysis revealed that the copia LTR retrotransposon based marker BnSHP1.A9-R2 can be used for breeding for pod shatter resistant varieties and reducing the loss of seed yield in oilseed rape.


Gene ◽  
2007 ◽  
Vol 393 (1-2) ◽  
pp. 116-126 ◽  
Author(s):  
Claude Maisonhaute ◽  
David Ogereau ◽  
Aurélie Hua-Van ◽  
Pierre Capy

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