scholarly journals Circadian clock locus frequency: protein encoded by a single open reading frame defines period length and temperature compensation.

1994 ◽  
Vol 91 (16) ◽  
pp. 7683-7687 ◽  
Author(s):  
B. D. Aronson ◽  
K. A. Johnson ◽  
J. C. Dunlap
mAbs ◽  
2013 ◽  
Vol 5 (4) ◽  
pp. 595-607 ◽  
Author(s):  
Wendy R. Gion ◽  
Rachel A. Davis-Taber ◽  
Dean A. Regier ◽  
Emma Fung ◽  
Limary Medina ◽  
...  

2009 ◽  
Vol 25 (3) ◽  
pp. 735-744 ◽  
Author(s):  
Yune Z. Kunes ◽  
Wendy R. Gion ◽  
Emma Fung ◽  
Jochen G. Salfeld ◽  
Rong-Rong Zhu ◽  
...  

Genome ◽  
1991 ◽  
Vol 34 (1) ◽  
pp. 6-12 ◽  
Author(s):  
Shiv S. Prasad ◽  
Linda J. Harris ◽  
David L. Baillie ◽  
Ann M. Rose

In this paper we present the sequence of an intact Caenorhabditis briggsae transposable element, Tcb2. Tcb2 is 1606 base pairs in length and contains 80 base pair imperfect terminal repeats and a single open reading frame. We have identified blocks of T-rich repeats in the regions 150–200 and 1421–1476 of this element which are conserved in the Caenorhabditis elegans element Tc1. The sequence conservation of these regions in elements from different Caenorhabditis species suggests that they are of functional importance. A single open reading frame corresponding to the major open reading frame of Tc1 is conserved among Tc1, Tcb1, and Tcb2. Comparison of the first 550 nucleotides of the sequence among the three elements has allowed the evaluation of a model proposing an extension of the major open reading frame. Our data support the suggestion that Tc1 is capable of producing a 335 amino acid protein. A comparison of the sequence coding for the amino and carboxy termini of the 273 amino acid transposase from Caenorhabditis Tc1-like elements and Drosophila HB1 showed different amounts of divergence for each of these regions, indicating that the two functional domains have undergone different amounts of selection. Our data are not compatible with the proposal that Tc1-related sequences have been acquired via horizontal transmission. The divergence of Tc1 from the two C. briggsae elements, Tcb1 and Tcb2, indicated that all three elements have been diverging from each other for approximately the same amount of time as the genomes of the two species.Key words: Caenorhabditis, transposable element, sequence comparison.


2001 ◽  
Vol 21 (8) ◽  
pp. 2619-2628 ◽  
Author(s):  
Michael A. Collett ◽  
Jay C. Dunlap ◽  
Jennifer J. Loros

ABSTRACT To understand the role of white collar-2 in theNeurospora circadian clock, we examined alleles ofwc-2 thought to encode partially functional proteins. We found that wc-2 allele ER24 contained a conservative mutation in the zinc finger. This mutation results in reduced levels of circadian rhythm-critical clock gene products, frq mRNA and FRQ protein, and in a lengthened period of the circadian clock. In addition, this mutation altered a second canonical property of the clock, temperature compensation: as temperature increased, period length decreased substantially. This temperature compensation defect correlated with a temperature-dependent increase in overall FRQ protein levels, with the relative increase being greater in wc-2(ER24) than in wild type, while overall frq mRNA levels were largely unaltered by temperature. We suggest that this temperature-dependent increase in FRQ levels partially rescues the lowered levels of FRQ resulting from the wc-2 (ER24) defect, yielding a shorter period at higher temperatures. Thus, normal activity of the essential clock component WC-2, a positive regulator offrq, is critical for establishing period length and temperature compensation in this circadian system.


Cell Research ◽  
2009 ◽  
Vol 19 (3) ◽  
pp. 296-306 ◽  
Author(s):  
Lijian Shao ◽  
Wei Feng ◽  
Yan Sun ◽  
Hao Bai ◽  
Jun Liu ◽  
...  

Virology ◽  
1999 ◽  
Vol 265 (1) ◽  
pp. 66-73 ◽  
Author(s):  
C.D. Smart ◽  
W. Yuan ◽  
R. Foglia ◽  
D.L. Nuss ◽  
D.W. Fulbright ◽  
...  

mBio ◽  
2021 ◽  
Author(s):  
Yue Hu ◽  
Xiaolan Liu ◽  
Qiaojia Lu ◽  
Yulin Yang ◽  
Qun He ◽  
...  

Temperature compensation allows clocks to adapt to all seasons by having a relatively constant period length at different physiological temperatures, but the mechanism of temperature compensation is unclear. Stability of clock proteins was previously proposed to be a major factor that regulated temperature compensation.


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