scholarly journals The oligomerization state of bacterial enzyme I (EI) determines EI's allosteric stimulation or competitive inhibition by α-ketoglutarate

2018 ◽  
Vol 293 (7) ◽  
pp. 2631-2639 ◽  
Author(s):  
Trang T. Nguyen ◽  
Rodolfo Ghirlando ◽  
Vincenzo Venditti
2015 ◽  
Vol 6 (1) ◽  
Author(s):  
Vincenzo Venditti ◽  
Vitali Tugarinov ◽  
Charles D. Schwieters ◽  
Alexander Grishaev ◽  
G. Marius Clore
Keyword(s):  

2020 ◽  
Vol 432 (16) ◽  
pp. 4481-4498 ◽  
Author(s):  
Rochelle R. Dotas ◽  
Trang T. Nguyen ◽  
Charles E. Stewart ◽  
Rodolfo Ghirlando ◽  
Davit A. Potoyan ◽  
...  

2011 ◽  
Vol 17 (3) ◽  
pp. 327-338 ◽  
Author(s):  
Adam B. Shapiro ◽  
Stephania Livchak ◽  
Ning Gao ◽  
James Whiteaker ◽  
Jason Thresher ◽  
...  

A novel assay for the NADPH-dependent bacterial enzyme UDP- N-acetylenolpyruvylglucosamine reductase (MurB) is described that has nanomolar sensitivity for product formation and is suitable for high-throughput applications. MurB catalyzes an essential cytoplasmic step in the synthesis of peptidoglycan for the bacterial cell wall, reduction of UDP- N-acetylenolpyruvylglucosamine to UDP- N-acetylmuramic acid (UNAM). Interruption of this biosynthetic pathway leads to cell death, making MurB an attractive target for antibacterial drug discovery. In the new assay, the UNAM product of the MurB reaction is ligated to L-alanine by the next enzyme in the peptidoglycan biosynthesis pathway, MurC, resulting in hydrolysis of adenosine triphosphate (ATP) to adenosine diphosphate (ADP). The ADP is detected with nanomolar sensitivity by converting it to oligomeric RNA with polynucleotide phosphorylase and detecting the oligomeric RNA with a fluorescent dye. The product sensitivity of the new assay is 1000-fold greater than that of the standard assay that follows the absorbance decrease resulting from the conversion of NADPH to NADP+. This sensitivity allows inhibitor screening to be performed at the low substrate concentrations needed to make the assay sensitive to competitive inhibition of MurB.


2020 ◽  
Vol 35 (5) ◽  
pp. 729-743 ◽  
Author(s):  
Christopher D. Erb ◽  
Dayna R. Touron ◽  
Stuart Marcovitch

1990 ◽  
Vol 64 (02) ◽  
pp. 326-332 ◽  
Author(s):  
J P Girma ◽  
Y Takahashi ◽  
A Yoshioka ◽  
J Diaz ◽  
D Meyer

SummaryWe have evidence that ristocetin and botrocetin mediate binding of von Willebrand Factor (vWF) to platelet glycoprotein lb (GPIb) through two distinct domains on the vWF molecule. This was established by using monoclonal antibodies (MAbs) to vWF and synthetic peptides derived from the sequence of vWF. MAb 322 and MAb NMC/vW 4 both recognize native vWF as well as fragments containing the GPIb-binding domain of vWF, obtained with the following enzymes: trypsin (116 kDa), V-8 pro tease (Spill, 320 kDa) and V-8 protease plus subtilisin (33-28 kDa). Nevertheless, the lack of reciprocal displacement between the two MAbs in experiments of competitive inhibition for binding to vWF demonstrate that their respective epitopes are separate. Both MAbs inhibit 125I-vWF binding to platelet membrane GPIb and vWF-dependent platelet agglutination induced by ristocetin. However, only MAb NMC/vW4 inhibits these functions in the presence of botrocetin and when ristocetin-induced platelet agglutination is inhibited by MAb 322, botrocetin is still able to restore the agglutination. The involvement of two distinct domains of vWF for binding to GPIb in the presence of ristocetin or botrocetin was confirmed in experiments of binding of 125I-vWF to platelets using as competitor synthetic peptides corresponding to the GPIb binding domain of vWF (Cys 474 to Pro 488 and Ser 692 to Pro 708). At a final concentration of 2.5 mM both peptides inhibit more than 90% of the binding of vWF to ristocetin-treated platelets but are unable to modify this binding in the presence of botrocetin. In conclusion our data suggest that botrocetin and ristocetin involve distinct sites on vWF for binding to GPIb.


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