DNA Structure and Fluctuations Sensed From a 1.1ns Molecular Dynamics Trajectory of a Fully Charged Zif268-DNA Complex in Water

1998 ◽  
Vol 16 (2) ◽  
pp. 301-312 ◽  
Author(s):  
G. Roxström ◽  
I. Velázquez ◽  
M. Paulino ◽  
O. Tapia
Keyword(s):  
Molecular Dynamics ◽  
Dna Structure ◽  
Molecular Dynamics Trajectory ◽  
Dna Complex

A Nanosecond Molecular Dynamics Trajectory for a B DNA Double Helix: Evidence for Substates

1994 ◽  
Vol 116 (10) ◽  
pp. 4461-4462 ◽  
Author(s):  
K. J. McConnell ◽  
R Nirmala ◽  
M. A. Young ◽  
G. Ravishanker ◽  
D. L. Beveridge
Keyword(s):  
Molecular Dynamics ◽  
Double Helix ◽  
Molecular Dynamics Trajectory ◽  
Dna Double Helix

scholarly journals Parallel performance of molecular dynamics trajectory analysis

2020 ◽  
Vol 32 (19) ◽  
Author(s):  
Mahzad Khoshlessan ◽  
Ioannis Paraskevakos ◽  
Geoffrey C. Fox ◽  
Shantenu Jha ◽  
Oliver Beckstein
Keyword(s):  
Molecular Dynamics ◽  
Trajectory Analysis ◽  
Parallel Performance ◽  
Molecular Dynamics Trajectory

A molecular dynamics simulation study of polyamine? and sodium?DNA. Interplay between polyamine binding and DNA structure

2004 ◽  
Vol 33 (8) ◽  
pp. 671-682 ◽  
Author(s):  
Nikolay Korolev ◽  
Alexander P. Lyubartsev ◽  
Aatto Laaksonen ◽  
Lars Nordenski�ld
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Simulation Study ◽  
Dna Structure ◽  
Dynamics Simulation
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