Identification and functional annotation of hypothetical proteins of uropathogenic Escherichia coli strain CFT073 towards designing antimicrobial drug targets

Author(s):  
Harpreet Kaur ◽  
Vikram Singh ◽  
Manmohit Kalia ◽  
Balvinder Mohan ◽  
Neelam Taneja
Pathogens ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 549
Author(s):  
Julia Ittensohn ◽  
Jacqueline Hemberger ◽  
Hannah Griffiths ◽  
Maren Keller ◽  
Simone Albrecht ◽  
...  

The uropathogenic Escherichia coli strain CFT073 causes kidney abscesses in mice Toll/interleukin-1 receptor domain-containing protein C (TcpC) dependently and the corresponding gene is present in around 40% of E. coli isolates of pyelonephritis patients. It impairs the Toll-like receptor (TLR) signaling chain and the NACHT leucin-rich repeat PYD protein 3 inflammasome (NLRP3) by binding to TLR4 and myeloid differentiation factor 88 as well as to NLRP3 and caspase-1, respectively. Overexpression of the tcpC gene stopped replication of CFT073. Overexpression of several tcpC-truncation constructs revealed a transmembrane region, while its TIR domain induced filamentous bacteria. Based on these observations, we hypothesized that tcpC expression is presumably tightly controlled. We tested two putative promoters designated P1 and P2 located at 5′ of the gene c2397 and 5′ of the tcpC gene (c2398), respectively, which may form an operon. High pH and increasing glucose concentrations stimulated a P2 reporter construct that was considerably stronger than a P1 reporter construct, while increasing FeSO4 concentrations suppressed their activity. Human urine activated P2, demonstrating that tcpC might be induced in the urinary tract of infected patients. We conclude that P2, consisting of a 240 bp region 5′ of the tcpC gene, represents the major regulator of tcpC expression.


2016 ◽  
Vol 126 (7) ◽  
pp. 2425-2436 ◽  
Author(s):  
Anna Waldhuber ◽  
Manoj Puthia ◽  
Andreas Wieser ◽  
Christine Cirl ◽  
Susanne Dürr ◽  
...  

BIO-PROTOCOL ◽  
2017 ◽  
Vol 7 (3) ◽  
Author(s):  
Anna Waldhuber ◽  
Manoj Puthia ◽  
Andreas Wieser ◽  
Catharina Svanborg ◽  
Thomas Miethke

2018 ◽  
Vol 6 (2) ◽  
Author(s):  
Alla K. Golomidova ◽  
Eugene E. Kulikov ◽  
Vladislav V. Babenko ◽  
Elena S. Kostryukova ◽  
Andrey V. Letarov

ABSTRACT Bacteriophage St11Ph5 was isolated from a sewage sample on a particularly phage-resistant uropathogenic Escherichia coli (UPEC) up11 host strain. It appeared to be closely related to bacteriophage G7C, isolated from horse feces; however, it carries a highly divergent host recognition module.


2008 ◽  
Vol 46 (3) ◽  
pp. 1076-1080 ◽  
Author(s):  
S. H. Lau ◽  
S. Reddy ◽  
J. Cheesbrough ◽  
F. J. Bolton ◽  
G. Willshaw ◽  
...  

2011 ◽  
Vol 49 (8) ◽  
pp. 3105-3106 ◽  
Author(s):  
N. Mendonca ◽  
V. Calhau ◽  
T. Lin ◽  
L. Boaventura ◽  
G. Ribeiro ◽  
...  

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