General method for automated feature extraction and selection and its application for gender classification and biomechanical knowledge discovery of sex differences in spinal posture during stance and gait

2020 ◽  
pp. 1-9
Author(s):  
Carlo Dindorf ◽  
Jürgen Konradi ◽  
Claudia Wolf ◽  
Bertram Taetz ◽  
Gabriele Bleser ◽  
...  
Keyword(s):  
Feature Extraction ◽  
Sex Differences ◽  
Knowledge Discovery ◽  
Gender Classification ◽  
Spinal Posture ◽  
Feature Extraction And Selection ◽  
Automated Feature Extraction ◽  
General Method

scholarly journals Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

2015 ◽  
Vol 22 (5) ◽  
pp. 993-1000 ◽  
Author(s):  
Sheng Yu ◽  
Katherine P Liao ◽  
Stanley Y Shaw ◽  
Vivian S Gainer ◽  
Susanne E Churchill ◽  
...  
Keyword(s):  
Rheumatoid Arthritis ◽  
Feature Extraction ◽  
High Throughput ◽  
Knowledge Sources ◽  
Phenotype Classification ◽  
Feature Extraction And Selection ◽  
Automated Feature Extraction ◽  
High Throughput Phenotyping ◽  
Text Features ◽  
Selection Of

Abstract Objective Analysis of narrative (text) data from electronic health records (EHRs) can improve population-scale phenotyping for clinical and genetic research. Currently, selection of text features for phenotyping algorithms is slow and laborious, requiring extensive and iterative involvement by domain experts. This paper introduces a method to develop phenotyping algorithms in an unbiased manner by automatically extracting and selecting informative features, which can be comparable to expert-curated ones in classification accuracy. Materials and methods Comprehensive medical concepts were collected from publicly available knowledge sources in an automated, unbiased fashion. Natural language processing (NLP) revealed the occurrence patterns of these concepts in EHR narrative notes, which enabled selection of informative features for phenotype classification. When combined with additional codified features, a penalized logistic regression model was trained to classify the target phenotype. Results The authors applied our method to develop algorithms to identify patients with rheumatoid arthritis and coronary artery disease cases among those with rheumatoid arthritis from a large multi-institutional EHR. The area under the receiver operating characteristic curves (AUC) for classifying RA and CAD using models trained with automated features were 0.951 and 0.929, respectively, compared to the AUCs of 0.938 and 0.929 by models trained with expert-curated features. Discussion Models trained with NLP text features selected through an unbiased, automated procedure achieved comparable or slightly higher accuracy than those trained with expert-curated features. The majority of the selected model features were interpretable. Conclusion The proposed automated feature extraction method, generating highly accurate phenotyping algorithms with improved efficiency, is a significant step toward high-throughput phenotyping.

Automated feature extraction for the classification of humanin vivo13C NMR spectra using statistical pattern recognition and wavelets

1996 ◽  
Vol 35 (6) ◽  
pp. 834-840 ◽  
Author(s):  
A. Rosemary Tate ◽  
Des Watson ◽  
Stephen Eglen ◽  
Theodores N. Arvanitis ◽  
E. Louise Thomas ◽  
...  
Keyword(s):  
Pattern Recognition ◽  
Feature Extraction ◽  
Nmr Spectra ◽  
Statistical Pattern Recognition ◽  
Statistical Pattern ◽  
Automated Feature Extraction

Investigation of automated feature extraction using multiple data sources

2003 ◽  
Author(s):  
Neal R. Harvey ◽  
Simon J. Perkins ◽  
Paul A. Pope ◽  
James P. Theiler ◽  
Nancy A. David ◽  
...  
Keyword(s):  
Feature Extraction ◽  
Data Sources ◽  
Multiple Data Sources ◽  
Multiple Data ◽  
Automated Feature Extraction

scholarly journals Penerapan K-Means Clustering Untuk Seleksi Frame Dominan Berbasis NTSC Pada Obyek Bergerak

2020 ◽  
Vol 7 (4) ◽  
pp. 745
Author(s):  
Rizka Indah Armianti ◽  
Achmad Fanany Onnilita Gaffar ◽  
Arief Bramanto Wicaksono Putra
Keyword(s):  
Feature Extraction ◽  
Video Data ◽  
Clustering Method ◽  
Data Frame ◽  
First Order ◽  
Feature Extraction And Selection ◽  
Different Shapes ◽  
Frame Set ◽  
Selection Of

<p class="Abstrak">Obyek dinyatakan bergerak jika terjadi perubahan posisi dimensi disetiap <em>frame</em>. Pergerakan obyek menyebabkan obyek memiliki perbedaan bentuk pola disetiap <em>frame-</em>nya. <em>Frame</em> yang memiliki pola terbaik diantara <em>frame</em> lainnya disebut <em>frame</em> dominan. Penelitian ini bertujuan untuk menyeleksi <em>frame</em> dominan dari rangkaian <em>frame</em> dengan menerapkan metode K-means <em>clustering</em> untuk memperoleh <em>centroid</em> dominan (<em>centroid</em> dengan nilai tertinggi) yang digunakan sebagai dasar seleksi <em>frame</em> dominan. Dalam menyeleksi <em>frame</em> dominan terdapat 4 tahapan utama yaitu akuisisi data, penetapan pola obyek, ekstrasi ciri dan seleksi. Data yang digunakan berupa data video yang kemudian dilakukan proses penetapan pola obyek menggunakan operasi pengolahan citra digital, dengan hasil proses berupa pola obyek RGB yang kemudian dilakukan ekstraksi ciri berbasis NTSC dengan menggunakan metode statistik orde pertama yaitu <em>Mean</em>. Data hasil ekstraksi ciri berjumlah 93 data <em>frame</em> yang selanjutnya dikelompokkan menjadi 3 <em>cluster</em> menggunakan metode K-Means. Dari hasil <em>clustering</em>, <em>centroid</em> dominan terletak pada <em>cluster</em> 3 dengan nilai <em>centroid</em> 0.0177 dan terdiri dari 41 data <em>frame</em>. Selanjutnya diukur jarak kedekatan seluruh data <em>cluster</em> 3 terhadap <em>centroid</em>, data yang memiliki jarak terdekat dengan <em>centroid</em> itulah <em>frame</em> dominan. Hasil seleksi <em>frame</em> dominan ditunjukkan pada jarak antar <em>centroid</em> dengan anggota <em>cluster</em>, dimana dari seluruh 41 data frame tiga jarak terbaik diperoleh adalah 0.0008 dan dua jarak bernilai  0.0010 yang dimiliki oleh <em>frame</em> ke-59, ke-36 dan ke-35.</p><p class="Abstrak"> </p><p class="Abstrak"><em><strong>Abstract</strong></em></p><p class="Abstract"><em>The object is declared moving if there is a change in the position of the dimensions in each frame. The movement of an object causes the object to have different shapes in each frame. The frame that has the best pattern among other frames is called the dominant frame. This study aims to select the dominant frame from the frame set by applying the K-means clustering method to obtain the dominant centroid (the highest value centroid) which is used as the basis for the selection of dominant frames. In selecting dominant frames, there are 4 main stages, namely data acquisition, determination of object patterns, feature extraction and selection. The data used in the form of video data which is then carried out the process of determining the pattern of objects using digital image processing operations, with the results of the process in the form of an RGB object pattern which is then performed NTSC-based feature extraction using the first-order statistical method, Mean. The data from feature extraction are 93 data frames which are then grouped into 3 clusters using the K-Means method. From the results of clustering, the dominant centroid is located in cluster 3 with a centroid value of 0.0177 and consists of 41 data frames. Furthermore, the proximity of all data cluster 3 to the centroid is measured, the data having the closest distance to the centroid is the dominant frame. The results of dominant frame selection are shown in the distance between centroids and cluster members, where from all 41 data frames the three best distances obtained are 0.0008, 0.0010, and 0.0010 owned by 59th, 36th and 35th frames.</em></p><p class="Abstrak"><em><strong><br /></strong></em></p><p> </p>

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