scholarly journals Technologies for studying functional neural networks of the human brain based on data of nuclear functional magnetic tomography

2022 ◽  
Vol 2155 (1) ◽  
pp. 012034
Author(s):  
I M Enyagina ◽  
A A Poyda ◽  
V A Orlov ◽  
S O Kozlov ◽  
A N Polyakov ◽  
...  
Keyword(s):  
Neural Networks ◽  
Cerebral Cortex ◽  
Human Brain ◽  
Large Scale ◽  
Fmri Data ◽  
Kurchatov Institute ◽  
Task Practice ◽  
Modular Platform ◽  
Correct Technique ◽  
Functional Areas

Abstract Nuclear functional magnetic resonance imaging (fMRI) is one of the most popular methods for studying the functional activity of the human brain. In particular, this method is used in medicine to obtain information about the state of the functional networks of the patient’s brain. However, the process of processing and analysis of experimental fMRI data is complex and requires the selection of the correct technique, depending on the specific task. Practice has shown that different processing methods can give slightly different results for the same set of fMRI data. There are a number of alternative specialized software packages for processing and analysis, but the methodology still needs improvement and development. We are working in this direction: we analyze the effectiveness of existing methods; we develop our own methods; we create software services for processing and analysis of fMRI data on the basis of the distributed modular platform “Digital Laboratory”, with the involvement of the supercomputer NRC “Kurchatov Institute”. For research we use experimental fMRI data obtained on the scanner Siemens Verio Magnetom 3T at the Kurchatov Institute. One of our tasks within the framework of this project is to improve the technology for studying large-scale functional areas of the cerebral cortex at rest. To build a hierarchical model of interaction of large-scale neural networks, a verified binding of functional areas to anatomy is required. Today, there are a number of generally accepted atlases of the functional areas of the human cerebral cortex, which, nevertheless, are constantly being finalized and refined. This article presents the results of our study of the Glasser atlas for the consistency of voxels within one region and the connectivity metrics of voxel dynamics.

scholarly journals Brain network constraints and recurrent neural networks reproduce unique trajectories and state transitions seen over the span of minutes in resting-state fMRI

2020 ◽  
Vol 4 (2) ◽  
pp. 448-466
Author(s):  
Amrit Kashyap ◽  
Shella Keilholz
Keyword(s):  
Neural Networks ◽  
Recurrent Neural Networks ◽  
Resting State ◽  
Large Scale ◽  
Brain Network ◽  
Generative Models ◽  
Network Activity ◽  
Fmri Data ◽  
State Transitions ◽  
Whole Brain

Large-scale patterns of spontaneous whole-brain activity seen in resting-state functional magnetic resonance imaging (rs-fMRI) are in part believed to arise from neural populations interacting through the structural network (Honey, Kötter, Breakspear, & Sporns, 2007 ). Generative models that simulate this network activity, called brain network models (BNM), are able to reproduce global averaged properties of empirical rs-fMRI activity such as functional connectivity (FC) but perform poorly in reproducing unique trajectories and state transitions that are observed over the span of minutes in whole-brain data (Cabral, Kringelbach, & Deco, 2017 ; Kashyap & Keilholz, 2019 ). The manuscript demonstrates that by using recurrent neural networks, it can fit the BNM in a novel way to the rs-fMRI data and predict large amounts of variance between subsequent measures of rs-fMRI data. Simulated data also contain unique repeating trajectories observed in rs-fMRI, called quasiperiodic patterns (QPP), that span 20 s and complex state transitions observed using k-means analysis on windowed FC matrices (Allen et al., 2012 ; Majeed et al., 2011 ). Our approach is able to estimate the manifold of rs-fMRI dynamics by training on generating subsequent time points, and it can simulate complex resting-state trajectories better than the traditional generative approaches.

scholarly journals Generative models of rich clubs in Hebbian neuronal networks and large-scale human brain networks

2014 ◽  
Vol 369 (1653) ◽  
pp. 20130531 ◽  
Author(s):  
Petra E. Vértes ◽  
Aaron Alexander-Bloch ◽  
Edward T. Bullmore
Keyword(s):  
Neural Networks ◽  
Human Brain ◽  
Large Scale ◽  
Hebbian Learning ◽  
Brain Connectivity ◽  
Brain Networks ◽  
Brain Network ◽  
Generative Models ◽  
Adaptive Behaviour ◽  
Topological Term

Rich clubs arise when nodes that are ‘rich’ in connections also form an elite, densely connected ‘club’. In brain networks, rich clubs incur high physical connection costs but also appear to be especially valuable to brain function. However, little is known about the selection pressures that drive their formation. Here, we take two complementary approaches to this question: firstly we show, using generative modelling, that the emergence of rich clubs in large-scale human brain networks can be driven by an economic trade-off between connection costs and a second, competing topological term. Secondly we show, using simulated neural networks, that Hebbian learning rules also drive the emergence of rich clubs at the microscopic level, and that the prominence of these features increases with learning time. These results suggest that Hebbian learning may provide a neuronal mechanism for the selection of complex features such as rich clubs. The neural networks that we investigate are explicitly Hebbian, and we argue that the topological term in our model of large-scale brain connectivity may represent an analogous connection rule. This putative link between learning and rich clubs is also consistent with predictions that integrative aspects of brain network organization are especially important for adaptive behaviour.

Network attributes describe a similarity between deep neural networks and large scale brain networks

2019 ◽  
Author(s):  
Kosuke Takagi
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Human Brain ◽  
Large Scale ◽  
Deep Neural Networks ◽  
Distribution Model ◽  
Common Mechanism ◽  
Learning Models ◽  
Connection Weight ◽  
Wide Range

Abstract Despite the recent success of deep learning models in solving various problems, their ability is still limited compared with human intelligence, which has the flexibility to adapt to a changing environment. To obtain a model which achieves adaptability to a wide range of problems and tasks is a challenging problem. To achieve this, an issue that must be addressed is identification of the similarities and differences between the human brain and deep neural networks. In this article, inspired by the human flexibility which might suggest the existence of a common mechanism allowing solution of different kinds of tasks, we consider a general learning process in neural networks, on which no specific conditions and constraints are imposed. Subsequently, we theoretically show that, according to the learning progress, the network structure converges to the state, which is characterized by a unique distribution model with respect to network quantities such as the connection weight and node strength. Noting that the empirical data indicate that this state emerges in the large scale network in the human brain, we show that the same state can be reproduced in a simple example of deep learning models. Although further research is needed, our findings provide an insight into the common inherent mechanism underlying the human brain and deep learning. Thus, our findings provide suggestions for designing efficient learning algorithms for solving a wide variety of tasks in the future.

scholarly journals Transcriptional profiles of supragranular-enriched genes associate with corticocortical network architecture in the human brain

2016 ◽  
Vol 113 (4) ◽  
pp. E469-E478 ◽  
Author(s):  
Fenna M. Krienen ◽  
B. T. Thomas Yeo ◽  
Tian Ge ◽  
Randy L. Buckner ◽  
Chet C. Sherwood
Keyword(s):  
Cerebral Cortex ◽  
Human Brain ◽  
Long Range ◽  
Network Architecture ◽  
Large Scale ◽  
Nonhuman Primates ◽  
Brain Network ◽  
Molecular Architecture ◽  
Gene Sets ◽  
Molecular Profiles

The human brain is patterned with disproportionately large, distributed cerebral networks that connect multiple association zones in the frontal, temporal, and parietal lobes. The expansion of the cortical surface, along with the emergence of long-range connectivity networks, may be reflected in changes to the underlying molecular architecture. Using the Allen Institute’s human brain transcriptional atlas, we demonstrate that genes particularly enriched in supragranular layers of the human cerebral cortex relative to mouse distinguish major cortical classes. The topography of transcriptional expression reflects large-scale brain network organization consistent with estimates from functional connectivity MRI and anatomical tracing in nonhuman primates. Microarray expression data for genes preferentially expressed in human upper layers (II/III), but enriched only in lower layers (V/VI) of mouse, were cross-correlated to identify molecular profiles across the cerebral cortex of postmortem human brains (n = 6). Unimodal sensory and motor zones have similar molecular profiles, despite being distributed across the cortical mantle. Sensory/motor profiles were anticorrelated with paralimbic and certain distributed association network profiles. Tests of alternative gene sets did not consistently distinguish sensory and motor regions from paralimbic and association regions: (i) genes enriched in supragranular layers in both humans and mice, (ii) genes cortically enriched in humans relative to nonhuman primates, (iii) genes related to connectivity in rodents, (iv) genes associated with human and mouse connectivity, and (v) 1,454 gene sets curated from known gene ontologies. Molecular innovations of upper cortical layers may be an important component in the evolution of long-range corticocortical projections.

Representation of adversarial images in deep neural networks and the human brain

2018 ◽  
Author(s):  
Chi Zhang ◽  
Xiaohan Duan ◽  
Ruyuan Zhang ◽  
Li Tong
Keyword(s):  
Neural Networks ◽  
Human Brain ◽  
Deep Neural Networks
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