Detection and Quantification of Campylobacter in Poultry Slaughterhouses Using Conventional Microbiological Technique, Most Probable Number, and Real-Time PCR

Author(s):  
Gustavo Perdoncini ◽  
Yuli Melisa Sierra Arguello ◽  
Leonardo Moreira Lima ◽  
Thales Quedi Furian ◽  
Karen Apellanis Borges ◽  
...  
2007 ◽  
Vol 70 (12) ◽  
pp. 2774-2781 ◽  
Author(s):  
I-CHEN YANG ◽  
DANIEL YANG-CHIH SHIH ◽  
JAN-YI WANG ◽  
TZU-MING PAN

Members of the Bacillus cereus group may produce diarrheal enterotoxins and could be potential hazards if they enter the food chain. Therefore, a method capable of detecting all the species in the B. cereus group rather than B. cereus alone is important. We selected nhe as the target and developed a real-time PCR assay to quantify enterotoxigenic strains of the B. cereus group. The real-time PCR assay was evaluated with 60 B. cereus group strains and 28 others. The assay was also used to construct calibration curves for different food matrices and feces. The assay has an excellent quantification capacity, as proved by its linearity (R2 > 0.993), wide dynamic quantification range (102 to 107 CFU/g for cooked rice and chicken, 103 to 107 CFU/ml for milk, and 104 to 107 CFU/g for feces), and adequate relative accuracy (85.5 to 101.1%). For the low-level contaminations, a most-probable-number real-time PCR assay was developed that could detect as low as 100 CFU/ml. Both assays were tested with real food samples and shown to be considerably appropriate for B. cereus group detection and quantification.


2007 ◽  
Vol 73 (18) ◽  
pp. 5840-5847 ◽  
Author(s):  
Jessica L. Nordstrom ◽  
Michael C. L. Vickery ◽  
George M. Blackstone ◽  
Shelley L. Murray ◽  
Angelo DePaola

ABSTRACT Vibrio parahaemolyticus is an estuarine bacterium that is the leading cause of shellfish-associated cases of bacterial gastroenteritis in the United States. Our laboratory developed a real-time multiplex PCR assay for the simultaneous detection of the thermolabile hemolysin (tlh), thermostable direct hemolysin (tdh), and thermostable-related hemolysin (trh) genes of V. parahaemolyticus. The tlh gene is a species-specific marker, while the tdh and trh genes are pathogenicity markers. An internal amplification control (IAC) was incorporated to ensure PCR integrity and eliminate false-negative reporting. The assay was tested for specificity against >150 strains representing eight bacterial species. Only V. parahaemolyticus strains possessing the appropriate target genes generated a fluorescent signal, except for a late tdh signal generated by three strains of V. hollisae. The multiplex assay detected <10 CFU/reaction of pathogenic V. parahaemolyticus in the presence of >104 CFU/reaction of total V. parahaemolyticus bacteria. The real-time PCR assay was utilized with a most-probable-number format, and its results were compared to standard V. parahaemolyticus isolation methodology during an environmental survey of Alaskan oysters. The IAC was occasionally inhibited by the oyster matrix, and this usually corresponded to negative results for V. parahaemolyticus targets. V. parahaemolyticus tlh, tdh, and trh were detected in 44, 44, and 52% of the oyster samples, respectively. V. parahaemolyticus was isolated from 33% of the samples, and tdh + and trh + strains were isolated from 19 and 26%, respectively. These results demonstrate the utility of the real-time PCR assay in environmental surveys and its possible application to outbreak investigations for the detection of total and pathogenic V. parahaemolyticus.


2005 ◽  
Vol 68 (5) ◽  
pp. 1083-1088 ◽  
Author(s):  
HAJIME TAKAHASHI ◽  
YOSHITO IWADE ◽  
HIROTAKA KONUMA ◽  
YUKIKO HARA-KUDO

A real-time PCR method targeting the toxR gene of Vibrio parahaemolyticus was developed to quantify the number of V. parahaemolyticus cells, including those of both the hemolysin-producing and nonproducing strains. The specificity of the primer and probe set was confirmed using 25 strains of V. parahaemolyticus and 30 strains of other microbial species. We determined the threshold cycle number using the real-time PCR and the number of V. parahaemolyticus cells by plate count using serially diluted pure culture and developed a standard curve for quantification. Standard curves for V. parahaemolyticus in seawater and seafood were established using artificially inoculated samples. The threshold cycle number and the number of V. parahaemolyticus cells were correlated with 101 to 107 CFU/ml in pure culture, seawater, and shellfish homogenate. The real-time PCR method developed in this study was compared with the most-probable-number method in seafood samples that were naturally contaminated. The differences in the number of V. parahaemolyticus cells as determined by the culture method and the PCR method were less than 10-fold.


2014 ◽  
Author(s):  
Παναγιώτα Μπαμπατσούλη

Στο α μέρος της παρούσας διατριβής μελετάται μια πιλοτική μονάδα βιολογικού καθαρισμού με βιοαντιδραστήρα μεμβρανών, η οποία επεξεργάζεται τα βιομηχανικά απόβλητα που εισέρχονται στις εγκαταστάσεις του βιολογικού της ΒΙ.ΠΕ Ηρακλείου Κρήτης, χωρίς καμμία προεπεξεργασία, πέραν από αυτή της εσχάρωσης. Το συγκεκριμένο απόβλητο χαρακτηρίζεται κυρίως από το πολύ υψηλό οργανικό φορτίo που περιέχει και τις υψηλές διακυμάνσεις στη σύστασή του. Οι αναλύσεις που πραγματοποιήθηκαν κατά τη διάρκεια της διατριβής στο συγκεκριμένο σύστημα αφορούσαν α) την εξέταση της επίδρασης του χρόνου παραμονής της λάσπης στην ποιότητα της εκροής β) τον προσδιορισμό των διαλυτών και δεσμευμένων εξωκυτταρικών πολυμερών που παράγονται στο σύστημα με στόχο την διερεύνηση της επίδρασης του χρόνου παραμονής της λάσπης στην έμφραξη των μεμβρανών και γ) την εξέταση της επίδρασης του υδραυλικού χρόνου παραμονής τόσο στην ποιότητα εξόδου της εκροής, όσο και στη συσσώρευση των εξωκυτταρικών πολυμερών ενώσεων και των διαλυτών μικροβιακών προϊόντων, σε σταθερό χρόνο παραμονής της λάσπης.Επιπλέον στα πλαίσια αυτής της διατριβής και στα ευρύτερα πλαίσια του όρου ‘βιοαντιδραστήρες μεμβρανών’ στο β μέρος εξετάστηκε ένας αντιδραστήρας προσκολλημένης βιομάζας χρησιμοποιώντας ως μέσο ανάπτυξης των μικροοργανισμών ένα πατενταρισμένο ύφασμα με στόχο τη μελέτη της επεξεργασίας ενός συνθετικού αποβλήτου που προσομοιώνει το ‘βιομηχανικό’ απόβλητο που προέρχεται από την έξοδο θαλασσινών υδατοκαλλιεργειών. Με την πάροδο του χρόνου αναπτύχθηκαν βακτήρια πάνω στο ύφασμα του αντιδραστήρα και κατόπιν πραγματοποιήθηκε ο εμβολιασμός του συστήματος με συγκεκριμένο γένος μικροαλγών για την αποτελεσματικότερη λειτουργία του. Οι αναλύσεις οι οποίες πραγματοποιήθηκαν στο συγκεκριμένο σύστημα είχαν ως στόχο: α) τον προσδιορισμό του βέλτιστου χρόνου λειτουργίας της αντλίας του αντιδραστήρα β) την περιγραφή της μικροβιακής κοινότητας που αποτελούσε το βιοφίλμ που αναπτύχθηκε στο ύφασμα του αντιδραστήρα και που προσδιορίστηκε συγκεκριμένα με τη μέθοδο του Pyrosequencing. γ) τον προσδιορισμό του αριθμού των συνολικών κυττάρων των μικροαλγών και των βακτηρίων ανά τετραγωνικό εκατοστό βιοφίλμ που εκτιμήθηκε με βάση τον αλγόριθμο του πιο πιθανού αριθμού (Most Probable Number - MPN) δ) την αποδοτικότητα του συστήματος (όσον αφορά τις απομακρύνσεις οργανικού υλικού, αζώτου και φωσφόρου) σε διάφορες αναλογίες άνθρακα προς άζωτο του τροφοδοτούμενου αποβλήτου ε) την εξέταση της σταθερότητας της βακτηριακής κοινότητας μέσω της τεχνικής της ηλεκροφόρησης σε πολυακρυλαμίδη σε διαβάθμιση αποδιατακτικών μέσων (DGGE) στ) τη σύνδεση συγκεκριμένων ομάδων μικροοργανισμών με την επεξεργασία του αποβλήτου. Η ποσοτικοποίηση του αριθμού γονιδίων πραγματοποιήθηκε με την τεχνική της Real-Time PCR. Συγκεκριμένα πραγματοποιήθηκε ο πολλαπλασιασμός των οξειδωτών αμμωνίας για τα αρχαία (AOA- ammonia oxidizing archaeal) και τα βακτήρια (AOB- ammonia Oxidizing Bacteria) (γονίδιο amoΑ), καθώς και ο πολλαπλασιασμός των γονιδίων απονιτροποίησης nirK, nirS, and nosZ.


2009 ◽  
Vol 72 (10) ◽  
pp. 2106-2109 ◽  
Author(s):  
JESSICA L. JONES ◽  
KATHY E. NOE ◽  
ROBIN BYARS ◽  
ANGELO DePAOLA

The applicability of real-time PCR was examined for detection of vibrios from postharvest-processed (PHP) oysters to allow for a more rapid assay and higher sample throughput than currently used. During June to October 2004, 68 PHP oyster samples were collected directly from PHP firms or from retail markets across the United States. PHP oysters were examined to determine the effectiveness of treatments in the reduction of vibrio levels and to compare the analytical methods utilized. The latter is the focus of the data presented here. Each sample was analyzed for Vibrio parahaemolyticus and V. vulnificus by using a 2-dilution, three-tube most-probable-number (MPN) and a 25-g presence/absence enrichment in alkaline peptone water. Following 6-h and overnight enrichment, aliquots from each MPN tube and the 25-g sample were streaked onto selective media and tested by real-time PCR. Colonies from the selective agar were confirmed as V. parahaemolyticus or V. vulnificus by DNA colony hybridization. DNA hybridization and real-time PCR results for each MPN tube and the 25-g enrichment at both time points were analyzed individually for each organism. The methods were in agreement for 857 (95%) of 901 and for 882 (98%) of 903 tubes for detection of V. parahaemolyticus and V. vulnificus, respectively. Overall, there was 96% agreement between real-time and DNA colony hybridization. The results obtained by real-time PCR were comparable to those from DNA colony hybridization, but analysis time was significantly reduced for the detection of vibrios in PHP-treated oysters.


2007 ◽  
Vol 70 (7) ◽  
pp. 1650-1655 ◽  
Author(s):  
ELAINE CRISTINA PEREIRA DE MARTINIS ◽  
ROBERT E. DUVALL ◽  
ANTHONY D. HITCHINS

Quantifying foodborne pathogens at concentrations of 0.1 to 1,000 CFU/g of food generally involves most-probable-number (MPN) enumeration, which takes at least 4 days. A real-time PCR assay (RTi-PCR) was developed to accelerate MPN enumeration of foodborne Listeria monocytogenes. Foods were spiked from 70 to 110 CFU/g, and triplicate subportions from 0.0001 to 1 g were selectively enriched for 48 h at 30°C. For standard MPN enumeration, the enrichments were subcultured on Oxford agar (48 h at 35°C) to isolate Listeria. For RTi-PCR MPN, the L. monocytogenes cells from the same enrichments were washed and resuspended in 2 ml of sterile water. DNA was extracted by boiling for 10 min. The DNA in the extract's supernatant was targeted with published oligonucleotide primers for amplifying an Lmo-specific sequence of 16S rRNA genes. Amplification was continuously monitored with SYBR Green. The resulting amplicon was characterized by its melting temperature. The L. monocytogenes specificity of the primers was confirmed by testing L. monocytogenes (15 strains), Listeria innocua (11 strains), and Listeria welshimeri, Listeria seeligeri, Listeria ivanovii, and Listeria grayi (1 strain each). Quantitatively spiked milk, lettuce, smoked salmon, Brie cheese, ice cream, pork pâté, salami, ready-to-eat shrimp, raw ground beef, and fresh soft cheese were enumerated by both the standard and the PCR MPN method. The paired results from the two MPN methods agreed well, except for the fresh cheese. For some foods, 1-g samples required a decimal dilution for a positive test result, suggesting concentration-dependent food ingredient interference with the RTi-PCR. This RTi-PCR method reduced the time necessary for the MPN enumeration of foodborne L. monocytogenes from 4 to 2 days.


2016 ◽  
Vol 74 (5) ◽  
pp. 1243-1254 ◽  
Author(s):  
Wataru Ruike ◽  
Atsushi Higashimori ◽  
Junichi Yaguchi ◽  
Yu-you Li

A combination of propidium monoazide (PMA) with real-time quantitative polymerase chain reaction (PMA-qPCR) was optimized to enumerate only viable Escherichia coli in anaerobic digestion processes. Repeating the PMA treatment twice and a final concentration of 100 μM resulted in an effective exclusion of DNA from heat-treated E. coli cells. In three anaerobic digestion processes, real-time PCR, PMA-qPCR, and the most probable number method (MPN) were used to estimate the numbers of total, viable, and culturable E. coli cells, respectively. Culturable concentrations of fecal coliforms were also measured by the membrane filter method. For thermophilic digestion, the reductions in total and viable E. coli cells from the digester influent to the effluent were significantly lower than those in culturable cells and fecal coliforms by two to four orders of magnitude. For mesophilic digestion, the differences in the reductions in E. coli and fecal coliforms counts were less than two orders of magnitude. Based on the measurements of viable E. coli determined by the PMA-qPCR method, the microbial quality of digester effluents was discussed for agricultural application, and pasteurization after anaerobic digestion was suggested for the destruction of viable pathogens.


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