scholarly journals Erratum: The physiologic and phenotypic significance of variation in human amylase gene copy number

2018 ◽  
Vol 108 (6) ◽  
pp. 1356-1356
2020 ◽  
Vol 111 (5) ◽  
pp. 1079-1086 ◽  
Author(s):  
Mads F Hjorth ◽  
Lars Christensen ◽  
Thomas M Larsen ◽  
Henrik M Roager ◽  
Lukasz Krych ◽  
...  

ABSTRACT Background The inconsistent link observed between salivary amylase gene copy number (AMY1 CN) and weight management is likely modified by diet and microbiome. Objective Based on analysis of a previously published study, we investigated the hypothesis that interaction between diet, Prevotella-to-Bacteriodes ratio (P/B ratio), and AMY1 CN influence weight change. Methods Sixty-two people with increased waist circumference were randomly assigned to receive an ad libitum New Nordic Diet (NND) high in dietary fiber, whole grain, intrinsic sugars, and starch or an Average Danish (Western) Diet (ADD) for 26 weeks. All foods were provided free of charge. Before subjects were randomly assigned to receive the NND or ADD diet, blood and fecal samples were collected, from which AMY1 CN and P/B ratio, respectively, were determined. Body weight change was described by using linear mixed models, including biomarker [log10(P/B ratio) and/or AMY1 CN] diet-group interactions. Results Baseline means ± SDs of log10(P/B ratio) and AMY1 CN were −2.1 ± 1.8 and 6.6 ± 2.4, respectively. Baseline P/B ratio predicted a 0.99-kg/unit (95% CI: 0.40, 1.57; n = 54; P < 0.001) higher weight loss for those subjects on the NND compared with those on the ADD diet, whereas AMY1 CN was not found to predict weight loss differences between the NND and ADD groups [0.05 kg/CN (95% CI: −0.40, 0.51; n = 54; P = 0.83)]. However, among subjects with low AMY1 CN (<6.5 copies), baseline P/B ratio predicted a 2.12-kg/unit (95% CI: 1.37, 2.88; n = 30; P < 0.001) higher weight loss for the NND group than the ADD group. No such differences in weight loss were found among subjects in both groups with high AMY1 CN [−0.17 kg/unit (95% CI: −1.01, 0.66; n = 24; P = 0.68)]. Conclusions The combined use of low AMY1 CN and pretreatment P/B ratio for weight loss prediction led to highly individualized weight loss results with the introduction of more fiber, whole grain, intrinsic sugars, and starch in the diet. These preliminary observations suggest that more undigested starch reaches the colon in individuals with low AMY1 CN, and that the fate of this starch depends on the gut microbiota composition. This trial was registered at clinicaltrials.gov as NCT01195610.


2018 ◽  
Vol 13 (4) ◽  
pp. 193-205 ◽  
Author(s):  
Patrick J.D. Elder ◽  
David B. Ramsden ◽  
David Burnett ◽  
Martin O. Weickert ◽  
Thomas M. Barber

2007 ◽  
Vol 39 (10) ◽  
pp. 1256-1260 ◽  
Author(s):  
George H Perry ◽  
Nathaniel J Dominy ◽  
Katrina G Claw ◽  
Arthur S Lee ◽  
Heike Fiegler ◽  
...  

2019 ◽  
Vol 25 (4) ◽  
pp. 553-564.e7 ◽  
Author(s):  
Angela C. Poole ◽  
Julia K. Goodrich ◽  
Nicholas D. Youngblut ◽  
Guillermo G. Luque ◽  
Albane Ruaud ◽  
...  

2019 ◽  
Author(s):  
Petar Pajic ◽  
Pavlos Pavlidis ◽  
Kirsten Dean ◽  
Lubov Neznanova ◽  
Rose-Anne Romano ◽  
...  

2018 ◽  
Author(s):  
Petar Pajic ◽  
Pavlos Pavlidis ◽  
Kirsten Dean ◽  
Lubov Neznanova ◽  
Erin Daugherity ◽  
...  

AbstractThe amylase gene (AMY), which codes for a starch-digesting enzyme in animals, underwent several gene copy number gains in humans1, dogs2, and mice3, presumably along with increased starch consumption during the evolution of these species. Here we present evidence for additionalAMYcopy number expansions in several mammalian species, most of which also consume starch-rich diets. We also show that these independentAMYcopy number gains are often accompanied by a gain in enzymatic activity of amylase in saliva. We used multi-species coalescent modeling to provide further evidence that these recurrentAMYgene copy number expansions were adaptive. Our findings underscore the overall importance of gene copy number amplification as a flexible and fast adaptive mechanism in evolution that can independently occur in different branches of the phylogeny.


eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Petar Pajic ◽  
Pavlos Pavlidis ◽  
Kirsten Dean ◽  
Lubov Neznanova ◽  
Rose-Anne Romano ◽  
...  

The amylase gene (AMY), which codes for a starch-digesting enzyme in animals, underwent several gene copy number gains in humans (Perry et al., 2007), dogs (Axelsson et al., 2013), and mice (Schibler et al., 1982), possibly along with increased starch consumption during the evolution of these species. Here, we present comprehensive evidence for AMY copy number expansions that independently occurred in several mammalian species which consume diets rich in starch. We also provide correlative evidence that AMY gene duplications may be an essential first step for amylase to be expressed in saliva. Our findings underscore the overall importance of gene copy number amplification as a flexible and fast evolutionary mechanism that can independently occur in different branches of the phylogeny.


2021 ◽  
Vol 6 (1) ◽  
Author(s):  
Niccolo’ Rossi ◽  
Elbay Aliyev ◽  
Alessia Visconti ◽  
Ammira S. A. Akil ◽  
Najeeb Syed ◽  
...  

AbstractStudies assessing the impact of amylase genes copy number (CN) on adiposity report conflicting findings in different global populations, likely reflecting the impact of ancestral and ethnic-specific environment and lifestyle on selection at the amylase loci. Here, we leverage population size and detailed adiposity measures from a large population biobank to resolve confounding effects and determine the relationship between salivary (AMY1) and pancreatic (AMY2A) amylase genes CN and adiposity in 2935 Qatari individuals who underwent whole-genome sequencing (WGS) as part of the Qatar Genome Programme. We observe a negative association between AMY1 CNs and trunk fat percentage in the Qatari population (P = 7.50 × 10−3) and show that Qataris of Arab descent have significantly lower CN at AMY1 (P = 1.32 × 10−10) as well as less favorable adiposity and metabolic profiles (P < 1.34 × 10−8) than Qataris with Persian ancestry. Indeed, lower AMY1 CN was associated with increased total and trunk fat percentages in Arabs (P < 4.60 × 10−3) but not in Persians. Notably, overweight and obese Persians reported a significant trend towards dietary restraint following weight gain compared to Arabs (P = 4.29 × 10−5), with AMY1 CN showing negative association with dietary self-restraint (P = 3.22 × 10−3). This study reports an association between amylase gene CN and adiposity traits in a large Middle Eastern population. Importantly, we leverage rich biobank data to demonstrate that the strength of this association varies with ethnicity, and may be influenced by population-specific behaviors that also contribute to adiposity traits.


Sign in / Sign up

Export Citation Format

Share Document