scholarly journals A STUDY OF LINKAGE DISEQUILIBRIUM IN BRITISH POPULATIONS OF DROSOPHILA SUBOBSCURA

Genetics ◽  
1979 ◽  
Vol 92 (3) ◽  
pp. 983-994 ◽  
Author(s):  
B Charlesworth ◽  
D Charlesworth ◽  
M Loukas

ABSTRACT Data have been obtained concerning the genetic content of samples of O chromosomes from three British populations, and J chromosomes from one population, of Drosophila subobscura. Some improvements to the genetic map of the O and J chromosomes have been made. Allele frequencies at the loci studied do not show much geographical variation, except where associations with geographically varying gene arrangements distort the picture. Striking nonrandom associations between alleles at three enzyme loci and closely linked O chromosome gene arrangements are present. Some historical explanation for these associations cannot at present be ruled out, but it is clear that a very high degree of genetic differentiation must exist between different gene arrangements in this species. There is no convincing direct evidence for linkage disequilibrium between pairs of enzyme loci, although there is a significant association between close linkage and a high value of the linkage disequilibrium measure. This suggests that there may be disequilibria between closely linked enzyme loci that are too small to be individually detectable. These results are in broad agreement with those reported by workers on other Drosophila species. At present there appears to be no evidence to support the concept that selection is sufficiently strong at individual enzyme loci to produce a high degree of nonrandom associations. (FRANKLIN and LEWONTIN 1970).

Genetics ◽  
1974 ◽  
Vol 78 (4) ◽  
pp. 1223-1244
Author(s):  
E Zouros ◽  
C B Krimbas ◽  
S Tsakas ◽  
M Loukas

ABSTRACT Gametic frequencies in one mainland and one island population of D. subobscura were obtained by means of extracting wild chromosomes and subsequently analyzing them for inversions and allozymes. The high degree of cytological heterogeneity which characterizes these populations is not reflected in the genetic data. Two cases of non-random association were observed among eighteen pair-wise comparisons involving gene alleles and inversions to which the locus is linked. In both cases exchange of alleles at the locus is completely suppressed by the inversions. Four cases of linkage disequilibrium were detected among eighteen pairs of loci; two of them could best be explained as transient associations generated by random drift. The results suggest that disequilibria among enzyme loci are not widespread in natural populations—Populations with a lower degree of chromosomal variation are genetically as variable as populations with a higher degree of chromosomal variation. This observation does not support the hypothesis that selection in marginal homokaryotypic populations is for specialized homozygous genotypes.


The reality of synapsis, or the pairing of chromosomes of biparental origin preparatory to their segregation during the maturation divisions of the germ cells, provides at present the most fruitful basis for any attempt to correlate genetic phenomena with cell structure; and it rests upon data derived from sources that are strictly independent of the behaviour of the chromosomes during the remarkable series of events intercalated in the prophase of the heterotype mitosis. It is, however, only possible to gain a knowledge regarding the manner in which homologous chromosomes are brought into association with one another by a study of the meiotic phase itself. To the earlier workers the reality of synapsis was the all-absorbing problem, while the means by which it is effected formed a secondary consideration. It is possible, given the conjugation of chromosomes derived from alternate parents, to explain the independent segregation of allelomorphic pairs on the assumption that their material basis resides in different bivalents; while their localisation in identical bivalents affords an equally satisfactory interpretation of the phenomena of coupling and repulsion. Indeed were coupling and repulsion always absolute the mode of synapsis would not present an urgent cause for enquiry. The progress made of late years, however, in the investigation of partial linkages, makes it imperative for the further development of the chromosome hypothesis to postulate some mechanism for the exchange of chromatin particles between conjugating elements; so that the degree of intimacy involved in the synaptic union assumes a new significance. While recognising with the utmost respect the brilliant speculations of Prof. Morgan and his school, it cannot be truthfully stated that there exists among cytologists at present a very high degree of unanimity as to the line along which the solution of this question must lie. In recent years the belief in telosynapsis (end-to-end union) has increased in prestige among botanical cytologists, while the alternative interpretation of parasynapsis (parallel conjugation) has found greater favour among those who have studied animal forms. In attempting to interpret satisfactorily the events of the meiotic phase in the case of animals, interest centres pre-eminently in those phenomena which intervene between the last premeiotic telophase and the formation of the “bouquet” on the one hand, and the process by which the reduced and longitudinally split (diplotene) segments become transformed into heterotype chromosomes on the other. The former furnish direct evidence of the relation of the meiotic filaments to the somatic chromosomes, while the latter in the light of the subsequent mitotic processes afford indirect data regarding the mode of synapsis, the reality of synapsis being assumed. Regarding the first, to an impartial student the work of the Schreiners (1) 1906, Jannsens (2) 1909, Agar (3) 1911, and Wilson (4) 1912, based in each case on particularly suitable material as regards both size and seriation, cannot fail to carry the conviction that here at least there is a fusion of whole chromosomes parasyndetically; and such an interpretation is fully consonant with the usual derivation of the heterotype chromosomes by separation along the line of cleavage in the diplotene filaments. There are, however, particular cases, notably among Flatworms and Orthoptera, where certain authors (Goldschmidt (5), Sutton(31), Davis (32), and Buchner (6), e. g .) have described the genesis of the tetrads in a manner which can only be reconciled with the theory of synapsis on the assumption that the conjugating elements are united by their extremities alone. In the case of plants the position is somewhat different; here, according to the most recent and very lucid account of Miss Digby for Osmunda, provision is made for the conjugation of univalents in the second contraction, while the fusion witnessed in the first contraction figures involves the reassociation of half chromosomes split in preparation for an arrested division in the preceding telophase. The chief issue between the rival schools in this case concerns not primarily that suggested by the etymological distinction, but the significance of the earlier stages in the meiotic phase. The telosynaptists interpret the first contraction in terms of the premeiotic prophase, whereas the parasynaptic school, like Grégoire (7), attempt to compare it with the bouquet zygotene processes in animals.


Author(s):  
Cecil E. Hall

The visualization of organic macromolecules such as proteins, nucleic acids, viruses and virus components has reached its high degree of effectiveness owing to refinements and reliability of instruments and to the invention of methods for enhancing the structure of these materials within the electron image. The latter techniques have been most important because what can be seen depends upon the molecular and atomic character of the object as modified which is rarely evident in the pristine material. Structure may thus be displayed by the arts of positive and negative staining, shadow casting, replication and other techniques. Enhancement of contrast, which delineates bounds of isolated macromolecules has been effected progressively over the years as illustrated in Figs. 1, 2, 3 and 4 by these methods. We now look to the future wondering what other visions are waiting to be seen. The instrument designers will need to exact from the arts of fabrication the performance that theory has prescribed as well as methods for phase and interference contrast with explorations of the potentialities of very high and very low voltages. Chemistry must play an increasingly important part in future progress by providing specific stain molecules of high visibility, substrates of vanishing “noise” level and means for preservation of molecular structures that usually exist in a solvated condition.


2011 ◽  
Vol E94-C (10) ◽  
pp. 1548-1556 ◽  
Author(s):  
Takana KAHO ◽  
Yo YAMAGUCHI ◽  
Kazuhiro UEHARA ◽  
Kiyomichi ARAKI

Genetics ◽  
1996 ◽  
Vol 144 (2) ◽  
pp. 635-645 ◽  
Author(s):  
David A Kirby ◽  
Wolfgang Stephan

Abstract We surveyed sequence variation and divergence for the entire 5972-bp transcriptional unit of the white gene in 15 lines of Drosophila melanogaster and one line of D. simulans. We found a very high degree of haplotypic structuring for the polymorphisms in the 3′ half of the gene, as opposed to the polymorphisms in the 5′ half. To determine the evolutionary mechanisms responsible for this pattern, we sequenced a 1612-bp segment of the white gene from an additional 33 lines of D. melanogaster from a European and a North American population. This 1612-bp segment encompasses an 834bp region of the white gene in which the polymorphisms form high frequency haplotypes that cannot be explained by a neutral equilibrium model of molecular evolution. The small number of recombinants in the 834bp region suggests epistatic selection as the cause of the haplotypic structuring, while an investigation of nucleotide diversity supports a directional selection hypothesis. A multi-locus selection model that combines features from both-hypotheses and takes the recent history of D. melanogaster into account may be the best explanation for these data.


Genetics ◽  
1992 ◽  
Vol 130 (1) ◽  
pp. 223-227
Author(s):  
A Gimelfarb

Abstract It is demonstrated that systems of two pleiotropically related characters controlled by additive diallelic loci can maintain under Gaussian stabilizing selection a stable polymorphism in more than two loci. It is also shown that such systems may have multiple stable polymorphic equilibria. Stabilizing selection generates negative linkage disequilibrium, as a result of which the equilibrium phenotypic variances are quite low, even though the level of allelic polymorphisms can be very high. Consequently, large amounts of additive genetic variation can be hidden in populations at equilibrium under stabilizing selection on pleiotropically related characters.


1977 ◽  
Vol 27 (1) ◽  
pp. 81-90
Author(s):  
S.A. Filfilan ◽  
D.C. Sigee

The uptake of tritiated thymine into cells of a heterogeneous population of Prorocentrum micans was investigated using light-microscope and electron-microscope autoradiography. Specificity of thymine uptake into DNA was demonstrated by the specific removal of label from wax-embedded material using DNase and by the high degree of localization of nuclear label to chromosomes in the electron-microscope autoradiographs. All nuclei, including both dividing and non-dividing cells, showed a substantial uptake of label, indicating that nuclear DNA synthesis in Prorocentrum micans is a continuous process. The level of DNA synthesis does show considerable variation, however, with very high levels in some interphase nuclei. The continuous replication of nuclear DNA provides further evidence of dinoflagellate affinity to the prokaryotes, and indicates that Prorocentrum micans is a very primitive eukaryote cell.


Author(s):  
Arthur Yosef ◽  
Eli Shnaider ◽  
Rimona Palas ◽  
Amos Baranes

This study presents a decision-support method to estimate the next year performance of corporate Operating Income Margin (OIM). It is based on a unique combination of cross-section model and the rules-based evaluation mechanism. The estimate is done in terms of broad categories, and not precise numerical values. The model is constructed as follows: its dependent variable (OIM) is one year ahead vs. the corresponding explanatory variables. This structure of the model allows us to view explanatory variables as reflecting financial potential of corporations. The evaluation component consists of a set of rules designed to identify the companies whose “potential” clearly points to an opportunity to invest. For the method presented here to succeed, it is necessary to utilize a highly reliable modeling method, even if it is “Fuzzy”. We apply Soft Regression (SR), which is a Soft Computing modeling tool based on Fuzzy Logic, and utilize all available proxy variables by creating intervals of values. Advantages of utilizing SR, and the intervals’-based modeling are extensively discussed. Modeling results for five consecutive years are consistent and stable, thus indicating high degree of reliability. Testing indicates very high success rate for the stock market related domain, the lowest being 87.9%.


1962 ◽  
Vol 15 (3) ◽  
pp. 525-534 ◽  
Author(s):  
M. Rabinovitch ◽  
W. Plaut

The incorporation of tritiated thymidine in Amoeba proteus was reinvestigated in order to see if it could be associated with microscopically detectable structures. Staining experiments with basic dyes, including the fluorochrome acridine orange, revealed the presence of large numbers of 0.3 to 0.5 µ particles in the cytoplasm of all cells studied. The effect of nuclease digestion on the dye affinity of the particles suggests that they contain DNA as well as RNA. Centrifugation of living cells at 10,000 g leads to the sedimentation of the particles in the centrifugal third of the ameba near the nucleus. Analysis of centrifuged cells which had been incubated with H3-thymidine showed a very high degree of correlation between the location of the nucleic acid-containing granules and that of acid-insoluble, deoxyribonuclease-sensitive labeled molecules and leads to the conclusion that cytoplasmic DNA synthesis in Amoeba proteus occurs in association with these particles.


1998 ◽  
Vol 15 (4) ◽  
pp. 755-764 ◽  
Author(s):  
M.L. FIRSOV ◽  
D.G. GREEN

Photoreceptors in the isolated turtle retina of two species of turtle, Chelydra serpentina and Pseudemus scripta elegans, were penetrated with double-barrel electrodes. Physiological responses were recorded through one barrel and Neurobiotin tracer was injected from the other. Intracellular injection of Neurobiotin revealed patterns of tracer-coupled photoreceptors. Both the patterns of tracer coupling and the electrophysiology suggest a high degree of specificity of connections. Rods seem to be coupled only to rods and green and red cones seem to be coupled to cones of the same spectral type. Receptive-field profiles, measured with a thin, sharply focused slit of light, often had well-defined peaks and troughs in sensitivity. We have taken advantage of this observation and used the position of a peak in sensitivity to locate the position on the retina of a coupled cell. In one rod, it was possible to correlate physiological and morphological data and to show that the peaks in the physiological receptive field occurred at positions on the retina where there were dye-coupled cells. This provides direct evidence that gap junctions produce the physiological coupling between rods.


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