Direct analysis of R408W mutation in phenylalanine hydroxylase gene by allele-specific PCR amplification

1993 ◽  
Vol 2 (3) ◽  
pp. 323-323 ◽  
Author(s):  
Dana Dvořáková ◽  
Lenka Fajkusová
1996 ◽  
Vol 75 (05) ◽  
pp. 757-759 ◽  
Author(s):  
Rainer Blasczyk ◽  
Markus Ritter ◽  
Christian Thiede ◽  
Jenny Wehling ◽  
Günter Hintz ◽  
...  

SummaryResistance to activated protein C is the most common hereditary cause for thrombosis and significantly linked to factor V Leiden. In this study, primers were designed to identify the factor V mutation by allele-specific PCR amplification. 126 patients with thromboembolic events were analysed using this technique, PCR-RFLP and direct sequencing. The concordance between these techniques was 100%. In 27 patients a heterozygous factor VGln506 mutation was detected, whereas one patient with recurrent thromboembolism was homozygous for the point mutation. Due to its time- and cost-saving features allele-specific amplification should be considered for screening of factor VGln506.


1997 ◽  
Vol 98 (3) ◽  
pp. 767-771 ◽  
Author(s):  
THIERRY PETIT ◽  
MARC DOMMERGUES ◽  
GÉRARD SOCIÉ ◽  
YVES DUMEZ ◽  
ELIANE GLUCKMAN ◽  
...  

2006 ◽  
Vol 154 (2) ◽  
pp. 341-348 ◽  
Author(s):  
Maria Rosaria Sapio ◽  
Daniela Posca ◽  
Giancarlo Troncone ◽  
Guido Pettinato ◽  
Lucio Palombini ◽  
...  

Objective: The somatic point mutation in the BRAF gene, which results in a valine-to-glutamate substitution at residue 600 (BRAFV600E), is an ideal hallmark of papillary thyroid carcinoma (PTC). However, its prevalence is varyingly reported in different studies, and its expression in the follicular variant PTC is controversial, reducing its potential usefulness as diagnostic marker. Design and methods: We developed an assay based on mutant allele-specific PCR amplification (MASA) to detect BRAF mutation. We compared the sensitivity of MASA, single-strand conformation polymorphism (SSCP) and direct DNA sequencing of PCR products. Then, we used MASA 78 to analyze 78 archival thyroid tissues, including normal samples, follicular adenomas, follicular carcinomas and PTC. Results: The MASA assay proved to be a more sensitive method than SSCP and DNA sequencing of PCR products. BRAF mutation was found by MASA in 19/43 (44.2%) of PTC, including 14/31 (45.2%) classic forms and 5/12 (41.7%) follicular variants. No mutations of BRAF were detected in the normal thyroid tissues, nor in follicular adenomas or follicular carcinomas. No correlation was found between BRAF mutation and clinicopathologic features nor with recurrence during a postoperative follow-up period of 4–11 years. BRAFV600E significantly correlated with absence of node metastasis. Conclusions: BRAFV600E is present in PTC, both in the classic form and in follicular variant with similar prevalence. No correlation was found between BRAF mutation and aggressive clinical behavior. MASA-PCR proved to be a specific, sensitive and reliable method to detect BRAF T1799A in DNA extracted from different sources, including cytologic samples obtained either fresh or from archival glass slides. We propose this method as a useful tool to improve accuracy of preoperative diagnosis identifying PTC from biopsies with indeterminate cytologic findings.


2003 ◽  
Vol 47 (7) ◽  
pp. 2231-2235 ◽  
Author(s):  
Igor Mokrousov ◽  
Tatiana Otten ◽  
Boris Vyshnevskiy ◽  
Olga Narvskaya

ABSTRACT We describe an allele-specific PCR assay to detect mutations in three codons of the rpoB gene (516, 526, and 531) in Mycobacterium tuberculosis strains; mutations in these codons are reported to account for majority of M. tuberculosis clinical isolates resistant to rifampin (RIF), a marker of multidrug-resistant tuberculosis (MDR-TB). Three different allele-specific PCRs are carried out either directly with purified DNA (single-step multiplex allele-specific PCR), or with preamplified rpoB fragment (nested allele-specific PCR [NAS-PCR]). The method was optimized and validated following analysis of 36 strains with known rpoB sequence. A retrospective analysis of the 287 DNA preparations from epidemiologically unlinked RIF-resistant clinical strains from Russia, collected from 1996 to 2002, revealed that 247 (86.1%) of them harbored a mutation in one of the targeted rpoB codons. A prospective study of microscopy-positive consecutive sputum samples from new and chronic TB patients validated the method for direct analysis of DNA extracted from sputum smears. The potential of the NAS-PCR to control for false-negative results due to lack of amplification was proven especially useful in the study of these samples. The developed rpoB-PCR assay can be used in clinical laboratories to detect RIF-resistant and hence MDR M. tuberculosis in the regions with high burdens of the MDR-TB.


2015 ◽  
Vol 20 (2) ◽  
pp. 90-93
Author(s):  
Nanda Bahadur Singh

This paper attempts to find out allele frequencies of AIM1 gene among six ethnic groups in Nepal by detecting a total number of 456 blood and nail samples through an allele specific PCR amplification. The research findings revealed that the AIM1 codon L374F polymorphism distinctively showed conspicuous ethnic distribution of the two alleles; namely allele “F” was found mostly high (11.4%) in the Caucasoid Chidimar and rarely low (1.1%) in the Dravidian Munda whereas Mongoloid Chepang, Gurung, Raute and Thakali entirely lacked the “F” allele and showed the monomorphic type for the “L” allele. The codon L374F could be the best genetic marker for distinguishing Caucasian populations from Mongoloid ones and would explain the ethno-genomics of human skin coloration among many ethnic groups in the world.Journal of Institute of Science and Technology, 2015, 20(2): 90-93


Sign in / Sign up

Export Citation Format

Share Document