scholarly journals The Basic Helix-Loop-Helix Transcription Factor Family in Plants: A Genome-Wide Study of Protein Structure and Functional Diversity

2003 ◽  
Vol 20 (5) ◽  
pp. 735-747 ◽  
Author(s):  
M. A. Heim
Keyword(s):  
Transcription Factor ◽  
Protein Structure ◽  
Functional Diversity ◽  
Transcription Factor Family ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide ◽  
A Genome ◽  
Genome Wide Study

scholarly journals Genome-Wide Identification and Analysis of the Chicken Basic Helix-Loop-Helix Factors

2010 ◽  
Vol 2010 ◽  
pp. 1-12 ◽  
Author(s):  
Wu-yi Liu ◽  
Chun-jiang Zhao
Keyword(s):  
Transcription Factor ◽  
Phylogenetic Analyses ◽  
Bhlh Transcription Factor ◽  
Transcription Factor Family ◽  
Early Date ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide ◽  
A Genome ◽  
Wide Range

Members of the basic helix-loop-helix (bHLH) family of transcription factors play important roles in a wide range of developmental processes. In this study, we conducted a genome-wide survey using the chicken (Gallus gallus) genomic database, and identified 104 bHLH sequences belonging to 42 gene families in an effort to characterize the chicken bHLH transcription factor family. Phylogenetic analyses revealed that chicken has 50, 21, 15, 4, 8, and 3 bHLH members in groups A, B, C, D, E, and F, respectively, while three members belonging to none of these groups were classified as ‘‘orphans’’. A comparison between chicken and human bHLH repertoires suggested that both organisms have a number of lineage-specific bHLH members in the proteomes. Chromosome distribution patterns and phylogenetic analyses strongly suggest that the bHLH members should have arisen through gene duplication at an early date. Gene Ontology (GO) enrichment statistics showed 51 top GO annotations of biological processes counted in the frequency. The present study deepens our understanding of the chicken bHLH transcription factor family and provides much useful information for further studies using chicken as a model system.

scholarly journals Genome-Wide Analysis of Basic/Helix-Loop-Helix Transcription Factor Family in Rice and Arabidopsis

2006 ◽  
Vol 141 (4) ◽  
pp. 1167-1184 ◽  
Author(s):  
Xiaoxing Li ◽  
Xuepeng Duan ◽  
Haixiong Jiang ◽  
Yujin Sun ◽  
Yuanping Tang ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcription Factor Family ◽  
Genome Wide Analysis ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide

A genome-wide survey on basic helix-loop-helix transcription factors in rat and mouse

2009 ◽  
Vol 20 (4) ◽  
pp. 236-246 ◽  
Author(s):  
X. Zheng ◽  
Y. Wang ◽  
Q. Yao ◽  
Z. Yang ◽  
K. Chen
Keyword(s):  
Transcription Factors ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide ◽  
A Genome ◽  
Genome Wide Survey

scholarly journals Functional Diversity of Human Basic Helix-Loop-Helix Transcription Factor TCF4 Isoforms Generated by Alternative 5′ Exon Usage and Splicing

PLoS ONE ◽  
2011 ◽  
Vol 6 (7) ◽  
pp. e22138 ◽  
Author(s):  
Mari Sepp ◽  
Kaja Kannike ◽  
Ave Eesmaa ◽  
Mari Urb ◽  
Tõnis Timmusk
Keyword(s):  
Transcription Factor ◽  
Functional Diversity ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Exon Usage

Identification and analysis of the mouse basic/Helix-Loop-Helix transcription factor family

2006 ◽  
Vol 350 (3) ◽  
pp. 648-656 ◽  
Author(s):  
Jing Li ◽  
Qi Liu ◽  
Mengsheng Qiu ◽  
Yuchun Pan ◽  
Yixue Li ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcription Factor Family ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix

scholarly journals A Genome-Wide Identification of Basic Helix-Loop-Helix Motifs in Pediculus humanus corporis (Phthiraptera: Pediculidae)

2014 ◽  
Vol 14 (1) ◽  
Author(s):  
Xu-Hua Wang ◽  
Yong Wang ◽  
De-Bao Zhang ◽  
A-Ke Liu ◽  
Qin Yao ◽  
...  
Keyword(s):  
Pediculus Humanus ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide ◽  
A Genome
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