scholarly journals Tissue Expression Profiling and Subcellular Characterization of Transmembrane (TMEM) proteins

2011 ◽  
Vol 25 (S1) ◽  
Author(s):  
Math Cuajungco ◽  
Sonia Kumar ◽  
Danny Nguyen ◽  
Van Nguyen ◽  
Vinod Valluri ◽  
...  
2010 ◽  
Vol 1 (2) ◽  
pp. 57-92 ◽  
Author(s):  
Jian Chen ◽  
Sandy Williams ◽  
Samantha Ho ◽  
Howard Loraine ◽  
Deborah Hagan ◽  
...  

2011 ◽  
Vol 5 (5) ◽  
pp. e1167 ◽  
Author(s):  
Rubens L. do Monte-Neto ◽  
Adriano C. Coelho ◽  
Frédéric Raymond ◽  
Danielle Légaré ◽  
Jacques Corbeil ◽  
...  

2014 ◽  
Vol 32 (5) ◽  
pp. 1030-1040 ◽  
Author(s):  
Ángel M. Villegas-Fernández ◽  
Franziska Krajinski ◽  
Armin Schlereth ◽  
Eva Madrid ◽  
Diego Rubiales

2009 ◽  
Vol 57 (12) ◽  
pp. 1169-1181 ◽  
Author(s):  
Stephanie Plog ◽  
Lars Mundhenk ◽  
Nikolai Klymiuk ◽  
Achim D. Gruber

2019 ◽  
Vol 51 (10) ◽  
pp. 981-988 ◽  
Author(s):  
Xiaolan Rao ◽  
Richard A Dixon

Abstract Co-expression network analysis is one of the most powerful approaches for interpretation of large transcriptomic datasets. It enables characterization of modules of co-expressed genes that may share biological functional linkages. Such networks provide an initial way to explore functional associations from gene expression profiling and can be applied to various aspects of plant biology. This review presents the applications of co-expression network analysis in plant biology and addresses optimized strategies from the recent literature for performing co-expression analysis on plant biological systems. Additionally, we describe the combined interpretation of co-expression analysis with other genomic data to enhance the generation of biologically relevant information.


2020 ◽  
Vol 21 (2) ◽  
pp. 497
Author(s):  
Zhandong Cai ◽  
Peiqi Xian ◽  
Rongbin Lin ◽  
Yanbo Cheng ◽  
Tengxiang Lian ◽  
...  

The IREG (IRON REGULATED/ferroportin) family of genes plays vital roles in regulating the homeostasis of iron and conferring metal stress. This study aims to identify soybean IREG family genes and characterize the function of GmIREG3 in conferring tolerance to aluminum stress. Bioinformatics and expression analyses were conducted to identify six soybean IREG family genes. One GmIREG, whose expression was significantly enhanced by aluminum stress, GmIREG3, was studied in more detail to determine its possible role in conferring tolerance to such stress. In total, six potential IREG-encoding genes with the domain of Ferroportin1 (PF06963) were characterized in the soybean genome. Analysis of the GmIREG3 root tissue expression patterns, subcellular localizations, and root relative elongation and aluminum content of transgenic Arabidopsis overexpressing GmIREG3 demonstrated that GmIREG3 is a tonoplast localization protein that increases transgenic Arabidopsis aluminum resistance but does not alter tolerance to Co and Ni. The systematic analysis of the GmIREG gene family reported herein provides valuable information for further studies on the biological roles of GmIREGs in conferring tolerance to metal stress. GmIREG3 contributes to aluminum resistance and plays a role similar to that of FeIREG3. The functions of other GmIREG genes need to be further clarified in terms of whether they confer tolerance to metal stress or other biological functions.


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