scholarly journals Structure and optical function of amorphous photonic nanostructures from avian feather barbs: a comparative small angle X-ray scattering (SAXS) analysis of 230 bird species

2012 ◽  
Vol 9 (75) ◽  
pp. 2563-2580 ◽  
Author(s):  
Vinodkumar Saranathan ◽  
Jason D. Forster ◽  
Heeso Noh ◽  
Seng-Fatt Liew ◽  
Simon G. J. Mochrie ◽  
...  

Non-iridescent structural colours of feathers are a diverse and an important part of the phenotype of many birds. These colours are generally produced by three-dimensional, amorphous (or quasi-ordered) spongy β-keratin and air nanostructures found in the medullary cells of feather barbs. Two main classes of three-dimensional barb nanostructures are known, characterized by a tortuous network of air channels or a close packing of spheroidal air cavities. Using synchrotron small angle X-ray scattering (SAXS) and optical spectrophotometry, we characterized the nanostructure and optical function of 297 distinctly coloured feathers from 230 species belonging to 163 genera in 51 avian families. The SAXS data provided quantitative diagnoses of the channel- and sphere-type nanostructures, and confirmed the presence of a predominant, isotropic length scale of variation in refractive index that produces strong reinforcement of a narrow band of scattered wavelengths. The SAXS structural data identified a new class of rudimentary or weakly nanostructured feathers responsible for slate-grey, and blue-grey structural colours . SAXS structural data provided good predictions of the single-scattering peak of the optical reflectance of the feathers. The SAXS structural measurements of channel- and sphere-type nanostructures are also similar to experimental scattering data from synthetic soft matter systems that self-assemble by phase separation. These results further support the hypothesis that colour-producing protein and air nanostructures in feather barbs are probably self-assembled by arrested phase separation of polymerizing β-keratin from the cytoplasm of medullary cells. Such avian amorphous photonic nanostructures with isotropic optical properties may provide biomimetic inspiration for photonic technology.

2014 ◽  
Vol 47 (2) ◽  
pp. 810-815 ◽  
Author(s):  
Andreas Hofmann ◽  
Andrew E. Whitten

Small-angle X-ray scattering has established itself as a common technique in structural biology research. Here, two novel Java applications to aid modelling of three-dimensional macromolecular structures based on small-angle scattering data are described.MolScatis an application that computes small-angle scattering intensities from user-provided three-dimensional models. The program can fit the theoretical scattering intensities to experimental X-ray scattering data.SAFIRis a program for interactive rigid-body modelling into low-resolution shapes restored from small-angle scattering data. The program has been designed with an emphasis on ease of use and intuitive handling. An embedded version ofMolScatis used to enable quick evaluation of the fit between the model and experimental scattering data.SAFIRalso provides options to refine macromolecular complexes with optional user-specified restraints against scattering data by means of a Monte Carlo approach.


2002 ◽  
Vol 35 (4) ◽  
pp. 459-470 ◽  
Author(s):  
T. Vad ◽  
H.-G. Haubold ◽  
N. Waldöfner ◽  
H. Bönnemann

Anomalous small-angle X-ray scattering (ASAXS) experiments with synchrotron radiation were performed to study the three-dimensional nanostructures of metal/organic hybrids formed by crosslinking aluminium-organic-stabilized platinum nanoparticles with various bifunctional organic spacer molecules. The advantage of ASAXS is the possibility of separating the particle scattering from that of the organic components, thus providing unbiased information about particle size distributions and interparticle correlation. In order to obtain the structural information from the scattering data, a model function based on Vrij's analytical solution for a multicomponent system of hard spheres is proposed. The model is applied to three different samples and the results are compared with those obtained from the application of Fourier methods (characteristic function) and X-ray absorption measurements.


2008 ◽  
Vol 41 (6) ◽  
pp. 1046-1052 ◽  
Author(s):  
Jessica Lamb ◽  
Lisa Kwok ◽  
Xiangyun Qiu ◽  
Kurt Andresen ◽  
Hye Yoon Park ◽  
...  

Modern computing power has made it possible to reconstruct low-resolution, three-dimensional shapes from solution small-angle X-ray scattering (SAXS) data on biomolecules withouta prioriknowledge of the structure. In conjunction with rapid mixing techniques, SAXS has been applied to time resolve conformational changes accompanying important biological processes, such as biomolecular folding. In response to the widespread interest in SAXS reconstructions, their value in conjunction with such time-resolved data has been examined. The group I intron fromTetrahymena thermophilaand its P4–P6 subdomain are ideal model systems for investigation owing to extensive previous studies, including crystal structures. The goal of this paper is to assay the quality of reconstructions from time-resolved data given the sacrifice in signal-to-noise required to obtain sharp time resolution.


2004 ◽  
Vol 37 (5) ◽  
pp. 757-765 ◽  
Author(s):  
L. E. Levine ◽  
G. G. Long

A new transmission X-ray imaging technique using ultra-small-angle X-ray scattering (USAXS) as a contrast mechanism is described. USAXS imaging can sometimes provide contrast in cases where radiography and phase-contrast imaging are unsuccessful. Images produced at different scattering vectors highlight different microstructural features within the same sample volume. When used in conjunction with USAXS scans, USAXS imaging provides substantial quantitative and qualitative three-dimensional information on the sizes, shapes and spatial arrangements of the scattering objects. The imaging technique is demonstrated on metal and biological samples.


2018 ◽  
Vol 122 (45) ◽  
pp. 10320-10329 ◽  
Author(s):  
Amin Sadeghpour ◽  
Marjorie Ladd Parada ◽  
Josélio Vieira ◽  
Megan Povey ◽  
Michael Rappolt

1999 ◽  
Vol 32 (5) ◽  
pp. 1554-1558 ◽  
Author(s):  
Katsuhiro Inomata ◽  
Li-Zhi Liu ◽  
Takuhei Nose ◽  
Benjamin Chu

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