scholarly journals Characterising maize viruses associated with maize lethal necrosis symptoms in sub Saharan Africa

2017 ◽  
Author(s):  
I.P. Adams ◽  
L.A. Braidwood ◽  
F. Stomeo ◽  
N. Phiri ◽  
B. Uwumukiza ◽  
...  

AbstractMaize lethal necrosis disease (MLN) is an emerging disease in East Africa caused by the introduction of Maize chlorotic mottle virus (MCMV). Recent activity seeking to limit spread of the disease is reliant on effective diagnostics. Traditional diagnostics applied on samples with typical field symptoms of MLN have often given negative results using ELISA or PCR for MCMV and Sugarcane mosaic virus (SCMV). Samples collected in the field with typical MLN symptoms were examined using next generation sequencing (NGS). SCMV was found to be more prevalent than suggested by targeted diagnostics. Additionally, the panel of samples were found to be infected with a range of other viruses, seven of which are described here for the first time. Although not previously identified in the region, Maize yellow mosaic virus (MYMV) was the most prevalent virus after MCMV. The development of targeted diagnostics for emerging viruses is complicated when the extent of field variation is unknown, something that can be negated by using NGS methods. As a result we explored MinION technology which may be more readily deployable in resource poor settings. The results show that this sequencer can diagnose known viruses and future iterations have the potential to identify novel viruses.

Afrika Focus ◽  
2019 ◽  
Vol 32 (2) ◽  
pp. 39-48
Author(s):  
Victoria B. Bulegeya ◽  
Mark W. Jones ◽  
Tryphone G. Muhamba ◽  
Biswanath Das ◽  
Peter R. Thomison ◽  
...  

Maize lethal necrosis (MLN) disease caused by a combined infection of Maize chlorotic mottle virus (MCMV) and any cereal infecting potyvirus is a threat to food security in Sub-Saharan Africa (SSA). Resistance to potyvirus has been extensively studied and Mdm1 gene for potyvirus resistance on chromosome 6 of maize is linked to Y1 gene for maize endosperm colour. This study is aimed at selecting for coupling-phase recombination of potyvirus resistance and white endosperm colour. White susceptible maize lines CML333 and CML277 were crossed with a yellow resistant line, Pa405, to produce F1 and F2 progenies. Progenies were screened using molecular markers to recover 22 white endosperm recombinants. 22 selections were advanced to F3 recombinant families, and 10 were assayed for their responses to Maize dwarf mosaic virus (MDMV) and Sugarcane mosaic virus (SCMV). Four families segregated for SCMV resistance, selection of homozygous recombinants within these families will provide lines appropriate for improving lines with resistance to SCMV and MLN resistance in SSA.


Afrika Focus ◽  
2019 ◽  
Vol 32 (2) ◽  
Author(s):  
Victoria B. Bulegeya ◽  
Mark W. Jones ◽  
Tryphone G. Muhamba ◽  
Biswanath Das ◽  
Peter R. Thomison ◽  
...  

Maize lethal necrosis (MLN) disease caused by a combined infection of Maize chlorotic mottle virus (MCMV) and any cereal infecting potyvirus is a threat to food security in Sub-Saharan Africa (SSA). Resistance to potyvirus has been extensively studied and Mdm1 gene for potyvirus resistance on chromosome 6 of maize is linked to Y1 gene for maize endosperm colour. This study is aimed at se- lecting for coupling-phase recombination of potyvirus resistance and white endosperm colour. White susceptible maize lines CML333 and CML277 were crossed with a yellow resistant line, Pa405, to produce F1 and F2 progenies. Progenies were screened using molecular markers to recover 22 white endosperm recombinants. 22 selections were advanced to F3 recombinant families, and 10 were as- sayed for their responses to Maize dwarf mosaic virus (MDMV) and Sugarcane mosaic virus (SCMV). Four families segregated for SCMV resistance, selection of homozygous recombinants within these families will provide lines appropriate for improving lines with resistance to SCMV and MLN resistance in SSA. KEY WORDS: MAIZE LETHAL NECROSIS (MLN), WHITE MAIZE, POTYVIRUS RESISTANCE, GENETIC RECOMBINATION, SUB-SAHARAN AFRICA.


Plant Disease ◽  
2021 ◽  
Author(s):  
Lucy R. Stewart ◽  
Kristen Willie

A maize-infecting polerovirus, variously named maize yellow dwarf virus RMV2 (MYDV RMV2), MYDV-like, and maize yellow mosaic virus (MaYMV), is frequently found in mixed infections in plants also infected with maize chlorotic mottle virus (MCMV) and sugarcane mosaic virus (SCMV), known to synergistically cause maize lethal necrosis (MLN). MaYMV was discovered in deep sequencing studies precipitated by recent maize lethal necrosis (MLN) emergence and is prevalent at global locations with MLN, but its role in or contribution to disease was not known. We examined how MaYMV impacted disease development in mixed infections with MCMV, SCMV, and both MCMV and SCMV compared to mock inoculated plants. Results demonstrated that MaYMV symptoms included stunting as well as leaf reddening in single and mixed infections. MaYMV did not recapitulate MLN synergistic disease in double infections in which either MCMV or SCMV was missing (MaYMV + MCMV or MaYMV + SCMV), but did significantly enhance stunting in mixed infections, and suppressed titers of both MCMV and SCMV in double infections. Interestingly, MaYMV strongly suppressed the SCMV-induced titer increase of MCMV in triple infections, but MLN symptoms still occurred with the reduced MCMV titer. These data indicate the potential disease impact of this newly discovered ubiquitous maize virus, alone and in the context of MLN.


2015 ◽  
Vol 105 (7) ◽  
pp. 956-965 ◽  
Author(s):  
George Mahuku ◽  
Benham E. Lockhart ◽  
Bramwel Wanjala ◽  
Mark W. Jones ◽  
Janet Njeri Kimunye ◽  
...  

In sub-Saharan Africa, maize is a staple food and key determinant of food security for smallholder farming communities. Pest and disease outbreaks are key constraints to maize productivity. In September 2011, a serious disease outbreak, later diagnosed as maize lethal necrosis (MLN), was reported on maize in Kenya. The disease has since been confirmed in Rwanda and the Democratic Republic of Congo, and similar symptoms have been reported in Tanzania, Uganda, South Sudan, and Ethiopia. In 2012, yield losses of up to 90% resulted in an estimated grain loss of 126,000 metric tons valued at $52 million in Kenya alone. In eastern Africa, MLN was found to result from coinfection of maize with Maize chlorotic mottle virus (MCMV) and Sugarcane mosaic virus (SCMV), although MCMV alone appears to cause significant crop losses. We summarize here the results of collaborative research undertaken to understand the biology and epidemiology of MLN in East Africa and to develop disease management strategies, including identification of MLN-tolerant maize germplasm. We discuss recent progress, identify major issues requiring further research, and discuss the possible next steps for effective management of MLN.


2017 ◽  
Author(s):  
Luke A Braidwood ◽  
Diego F Quito-Avila ◽  
Darlene Cabanas ◽  
Alberto Bressan ◽  
Anne Wangai ◽  
...  

ABSTRACTMaize chlorotic mottle virushas been rapidly spreading around the globe over the past decade. The interactions ofMaize chlorotic mottle viruswith potyviridae viruses causes an aggressive synergistic viral condition - maize lethal necrosis, which can cause total yield loss. Maize production in sub-Saharan Africa, where it is the most important cereal, is threatened by the arrival of maize lethal necrosis. We obtainedMaize chlorotic mottle virusgenome sequences from across East Africa and for the first time from Ecuador and Hawaii, and constructed a phylogeny which highlights the similarity of Chinese to African isolates, and Ecuadorian to Hawaiian isolates. We used a measure of clustering, the adjusted Rand index, to extract region-specific SNPs and coding variation that can be used for diagnostics. The population genetics analysis we performed shows that the majority of sequence diversity is partitioned between populations, with diversity extremely low within China and East Africa.


2017 ◽  
Vol 107 (10) ◽  
pp. 1095-1108 ◽  
Author(s):  
Frank M. Hilker ◽  
Linda J. S. Allen ◽  
Vrushali A. Bokil ◽  
Cheryl J. Briggs ◽  
Zhilan Feng ◽  
...  

Maize lethal necrosis (MLN) has emerged as a serious threat to food security in sub-Saharan Africa. MLN is caused by coinfection with two viruses, Maize chlorotic mottle virus and a potyvirus, often Sugarcane mosaic virus. To better understand the dynamics of MLN and to provide insight into disease management, we modeled the spread of the viruses causing MLN within and between growing seasons. The model allows for transmission via vectors, soil, and seed, as well as exogenous sources of infection. Following model parameterization, we predict how management affects disease prevalence and crop performance over multiple seasons. Resource-rich farmers with large holdings can achieve good control by combining clean seed and insect control. However, crop rotation is often required to effect full control. Resource-poor farmers with smaller holdings must rely on rotation and roguing, and achieve more limited control. For both types of farmer, unless management is synchronized over large areas, exogenous sources of infection can thwart control. As well as providing practical guidance, our modeling framework is potentially informative for other cropping systems in which coinfection has devastating effects. Our work also emphasizes how mathematical modeling can inform management of an emerging disease even when epidemiological information remains scanty.[Formula: see text] Copyright © 2017 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .


2018 ◽  
Vol 5 (1) ◽  
pp. 301-322 ◽  
Author(s):  
Margaret G. Redinbaugh ◽  
Lucy R. Stewart

Maize lethal necrosis (MLN) is a disease of maize caused by coinfection of maize with maize chlorotic mottle virus (MCMV) and one of several viruses from the Potyviridae, such as sugarcane mosaic virus, maize dwarf mosaic virus, Johnsongrass mosaic virus or wheat streak mosaic virus. The coinfecting viruses act synergistically to result in frequent plant death or severely reduce or negligible yield. Over the past eight years, MLN has emerged in sub-Saharan East Africa, Southeast Asia, and South America, with large impacts on smallholder farmers. Factors associated with MLN emergence include multiple maize crops per year, the presence of maize thrips ( Frankliniella williamsi), and highly susceptible maize crops. Soil and seed transmission of MCMV may also play significant roles in development and perpetuation of MLN epidemics. Containment and control of MLN will likely require a multipronged approach, and more research is needed to identify and develop the best measures.


2017 ◽  
Vol 6 (2) ◽  
pp. 65
Author(s):  
Sitta J. ◽  
Nzuve F. M. ◽  
Olubayo F. M. ◽  
Mutinda C. ◽  
Muiru W. M. ◽  
...  

Maize (Zea mays L.) is the most widely grown staple food crop in Sub Saharan Africa (SSA) and occupies more than 33 million hectares each year. The recent outbreak and rapid spread of the Maize Lethal Necrosis (MLN) disease has emerged as a great challenge to maize production, threatening food security for the majority of households in the Eastern Africa region with yield loss estimated to be 50-90%. The disease is a result of synergistic interaction between two viruses, Sugarcane mosaic virus (SCMV) and Maize chlorotic mottle virus (MCMV). The objective of this study was to identify maize genotypes with resistance to MLN. In season one, 73 maize genotypes comprising 25 inbred lines from research institutes, 30 lines from the International Maize and Wheat Improvement Centre (CIMMYT) and 18 farmer varieties were screened for resistance to MLN. In season 2, only 48 genotypes were screened after some of the inbred lines showed complete susceptibility to MLN. These genotypes were grown in three replications in a completely randomized design in polythene bags in the greenhouse at the University of Nairobi. The plants were artificially inoculated using a mixture of SCMV and MCMV. .Weekly MLN disease severity scores using a scale of 1 to 5 (1 = highly resistant and 5 = highly susceptible) and % MLN incidence were recorded and eventually converted into Area under Disease Progress Curve (AUDPC) to give an indication of the disease intensity over time. The plants were allowed to grow to flowering stage to observe the effect of the MLN on the maize productivity. Analysis of Variance revealed wide genetic variation among the genotypes ranging from resistant to highly susceptible. In season 1, three farmer varieties namely MLR2, MLR11 and MLR13 showed resistance to MLN with a mean severity score of 2. In season 2, MLN12, MLN17, MLN18, MLN19, and MLR4 showed low MLN severity ranging from 2-3. The genotypes MLR6, MLR9, MLR16 and MLR18 showed MLN severity of 3 and early maturity traits. This study also validated the presence of MLN resistance among some CIMMYT lines depicted to show resistance in previous studies. These resistant genotypes could serve as donors in the introgression of the resistance into the adapted Kenyan maize backgrounds. This will go a long way in ensuring sustainable maize productivity while improving the livelihoods of the small-scale farmers who form the bulk of the major maize producers in Kenya.


2021 ◽  
Author(s):  
Olufemi Alabi

Abstract Introduction: In the past, SCMV and other SCMD-causal viruses have caused serious losses in various maize and sugarcane-growing regions, including Hawaii, Egypt, Natal (South Africa), Argentina, Puerto Rico, Cuba, Australia, USA (Koike and Gillaspie, 1989; Fuchs and Grüntzig, 1995; Chen et al., 2002) and several other countries in South America (Perera et al., 2012 and references therein). Epidemics have been followed by replacement of susceptible noble-type canes by hybrid canes with tolerance or, better still, resistance and the propagation of resistant maize genotypes (Silva-Rosales et al., 2015 and references therein). The evolution of new strains of SCMV has required a continuing breeding programme to prevent heavy losses. Losses caused by SCMV are mainly (1) a reduced yield of the crop, (2) the need to include mosaic resistance when breeding new cultivars, and (3) the slowing of the interchange of cultivars between countries because of quarantine concerns over the introduction of new strains of SCMV. Crop Losses: Crop losses caused by SCMV depend on many factors, including the susceptibility of the cultivars to the prevailing strains of SCMV, the incidence of infection, the prevailing environmental conditions, the stage of growth when infection occurs, and interaction with other agents affecting the crop. Crop losses can vary from negligible to severe. Some documented instances of heavy losses in sugarcane crops due to mosaic outbreaks are as follows. In the 1980s, losses on some farms in the Isis district of Queensland, Australia, were estimated to be about 50% (Jones, 1987). In some commercial plantings of cv. Q95 from an infected source, the infected plants had fewer tillers and were less vigorous than apparently healthy plants nearby (Ryan and Jones, 1986). In Guatemala in 1974-1976, many stunted stools of mosaic-affected cv. Q83 were responsible for lack of uniformity in fields near Santa Lucia. The cane tonnage in these fields was seriously reduced (Fors, 1978). Estimations of Potential Losses in Experiments: Sugarcane In Natal, South Africa, plots of sugarcane cv. NCo376 (highly susceptible) and N12 (moderately resistant) were established with either infected or healthy cane. The plots were harvested regularly and tested serologically for SCMV to the 6th ratoon. There was a decline in the number of shoots showing mosaic symptoms in both cultivars during the experiment. However, mean yield reductions were 22% for infected NCo376 and 16% for N12 compared with yields of initially healthy cane (Cronje et al., 1994). In Brazil, plots in two locations were planted with 0, 25, 50 and 100% initial SCMV infection. Virus spread was noticeable for cv. CB46/47, but negligible for cv. IAC50/134. For CB46/47 yield losses between initially healthy and 25% infected plots were 27% and 19% in the two locations; with 100% infection, yield reduction was 71% in both areas. For IAC50/134 the only significant difference in yield was between 0 and 100% infection, an 18% reduction in diseased plots in both areas (Matsuoka and Costa, 1974). In Java, Indonesia, field trials with 0 and 100% SCMV-infected seed cane gave sugar yield reductions of 9.3% for POJ3016 and 11.1% for POJ3067 associated with the disease (Kuntohartono and Legowo, 1970). In Spain, when healthy sugarcane was planted between rows infected by SCMV, the cultivars CO62/175 and NA56/79 were sufficiently resistant for commercial production, but losses of 0.4-0.5 t/ha were found for every 1% infection between the 2nd and 4th cutting (Olalla Mercade et al., 1984a). In Pakistan, mosaic-free seed cane gave a significantly higher yield of cane (48.5 t/ha) than mosaic-infected seed cane (44.5 t/ha) (Ahmad et al., 1991). Maize In East Africa, 10 susceptible maize hybrids had yield losses of 18-46% when inoculated with SCMV in the seedling stage (Louie and Darrah, 1980). In Germany, SCMV was more prevalent than MDMV, but had a similar effect on growth and yield of maize. Early infection reduced plant height by 25%, total weight by 38% and ear weight by 27% (Fuchs et al., 1990). Disease Complexes: SCMV and related potyviruses may occur in disease complexes with other plant pathogens; either additive or synergistic effects may occur. In Louisiana, USA, losses in sugarcane caused by Sorghum mosaic virus (formerly called SCMV-H) and ratoon stunting disease (RSD, caused by the bacterium Leifsonia xyli subsp. xyli) were additive in cv. CP67-412, but synergistic (greater than the sum of each disease separately) in CP65-357 (Koike, 1982). In Spain, RSD symptoms were associated with the presence of SCMV, and damage by RSD was greatest in fields with clear mosaic symptoms (Olalla Mercade et al., 1984b). In Thailand, inoculation of the downy mildew-susceptible maize cv. Guatemala with an SCMV-like virus increased susceptibility to Peronosclerospora sorghi only slightly, whereas with the resistant Suwan 1 maize cv., the virus increased susceptibility from 27 to 61% (Sutabutra et al., 1976). In many African (especial East African) countries, SCMV and some of the SCMD-causal viruses may also interact synergistically with Maize chlorotic mottle virus (genus Machlomovirus; family Tombusviridae) to cause maize lethal necrosis disease, an emerging debilitating disease of maize (Niblett and Claflin, 1978; Wangai et al., 2012) that can cause total crop loss.


Pathogens ◽  
2019 ◽  
Vol 9 (1) ◽  
pp. 4 ◽  
Author(s):  
Fatma Hussein Kiruwa ◽  
Samuel Mutiga ◽  
Joyce Njuguna ◽  
Eunice Machuka ◽  
Senait Senay ◽  
...  

Sustainable control of plant diseases requires a good understanding of the epidemiological aspects such as the biology of the causal pathogens. In the current study, we used RT-PCR and Next Generation Sequencing (NGS) to contribute to the characterization of maize lethal necrotic (MLN) viruses and to identify other possible viruses that could represent a future threat in maize production in Tanzania. RT-PCR screening for Maize Chlorotic Mottle Virus (MCMV) detected the virus in the majority (97%) of the samples (n = 223). Analysis of a subset (n = 48) of the samples using NGS-Illumina Miseq detected MCMV and Sugarcane Mosaic Virus (SCMV) at a co-infection of 62%. The analysis further detected Maize streak virus with an 8% incidence in samples where MCMV and SCMV were also detected. In addition, signatures of Maize dwarf mosaic virus, Sorghum mosaic virus, Maize yellow dwarf virus-RMV and Barley yellow dwarf virus were detected with low coverage. Phylogenetic analysis of the viral coat protein showed that isolates of MCMV and SCMV were similar to those previously reported in East Africa and Hebei, China. Besides characterization, we used farmers’ interviews and direct field observations to give insights into MLN status in different agro-ecological zones (AEZs) in Kilimanjaro, Mayara, and Arusha. Through the survey, we showed that the prevalence of MLN differed across regions (P = 0.0012) and villages (P < 0.0001) but not across AEZs (P > 0.05). The study shows changing MLN dynamics in Tanzania and emphasizes the need for regional scientists to utilize farmers’ awareness in managing the disease.


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