scholarly journals Analysis of phloem trajectory links tissue maturation to cell specialization

2021 ◽  
Author(s):  
Pawel Roszak ◽  
Jung-ok Heo ◽  
Bernhard Blob ◽  
Koichi Toyokura ◽  
Maria Angels de Luis Balaguer ◽  
...  

AbstractThe mechanisms that allow cells in the plant meristem to coordinate tissue-wide maturation gradients with specialized cell networks are critical for indeterminate growth. Here, we reconstructed the protophloem developmental trajectory of 19 cells from cell birth to terminal differentiation at single cell resolution in the Arabidopsis root. We found that cellular specification is mediated near the stem cell niche by PHLOEM EARLY DOF (PEAR) transcription factors. However, the PEAR dependent differentiation program is repressed by a broad gradient of PLETHORA (PLT) transcription factors, which directly inhibit PEARs’ own direct target ALTERED PHLOEM DEVELOPMENT (APL). The dissipation of PLT gradient around 7 cells from the stem cell activates APL expression, and a subsequent transitional network that results in a “seesaw” pattern of mutual inhibition over developmental time. Together, we provide a mechanistic understanding of how morphogen-like maturation gradients interface with cell-type specific transcriptional regulators to stage cellular differentiation.

2019 ◽  
Vol 225 (3) ◽  
pp. 1261-1272
Author(s):  
Diego Ornelas‐Ayala ◽  
Rosario Vega‐León ◽  
Emilio Petrone‐Mendoza ◽  
Adriana Garay‐Arroyo ◽  
Berenice García‐Ponce ◽  
...  

Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 1493-1493
Author(s):  
Elizabeth Csaszar ◽  
Daniel Kirouac ◽  
Genevieve Gavigan ◽  
Suzan Imren ◽  
Michelle Miller ◽  
...  

Abstract Abstract 1493 Poster Board I-516 Predictive control of human hematopoietic stem cell (HSC) self-renewal would enable more effective strategies to treat hematologic disease. Although evidence suggests that both cell autonomous (stem cell-associated transcription factors) and cell non-autonomous (the stem cell niche) mechanisms regulate stem cell fate, the dynamic interplay between these regulatory axis are poorly understood. Using a defined synthetic stem cell niche, we have been investigating the role of the transcription factors HOXB4 and the engineered fusion gene between NUP98 and the homeodomain of HOXA10 (NUP98A10HD), provided as soluble membrane-permeable proteins, as clinically relevant reagents to enhance in vitro HSC self-renewal. To aid our understanding of interactions between these complex processes, we have developed systems biology-based approaches to describe and predict cell supportive and non-supportive cell-cell interaction networks. Using a controlled and automated system to achieve semi-continuous protein delivery, and an accompanying model to predict dynamic intracellular protein concentrations, we have optimized strategies for the addition of the TAT-HOXB4 and TAT-NUP98A10HD fusion proteins to umbilical cord blood cultures. Our results demonstrate that an optimized delivery scheme of 1.5nM (from day 0-4) and 6nM (from day 4-8) every 30min, produces stable intracellular levels of TAT-HOXB4, and results in a increase of primitive progenitor cells, as measured by colony counts from bulk long term culture-initiating cell (LTC-IC) assays, of 1.9x greater than the classic, non-optimized TAT-HOXB4 delivery scheme (40nM every 4h) and 3.1x greater than untreated control cells. Ongoing studies are extending these significantly enhanced primitive progenitor outputs to HSC self-renewal using the NOD/SCID repopulating cell assay. Our results thus far demonstrate that the nuclear concentrations of HSC-associated transcription factors can significantly impact stem cell self-renewal. In these studies we also observed, for the first time, that endogenously produced secreted factors limit HSC output, and that TAT-HOXB4 acts to desensitize the primitive blood progenitor cells to negative feedback regulation by secreted factors. As a means of prospectively regulating the levels of endogenously produced factors in culture, we have implemented a media delivery approach, in which cell culture media volume is adjusted throughout the culture period, to counteract increasing negative inhibitors by endogenously produced secreted factors. Using this “fed-batch” delivery approach, we have achieved significant (p<0.05) improvement in the total cell number (TNC), colony forming cells (CFCs), and LTC-ICs, of 4.6x, 4.9x, and 4.1x respectively, above the blood stem and progenitor numbers obtained from untreated control cells. Furthermore, data suggests that this non-autonomous regulation promotes HSC self-renewal for a more prolonged period in vitro, with total expansions after 12 days of culture reaching 80x for CFCs and 22x for LTC-ICs. Media dilution strategies have been optimized to further limit negative feedback from mature cell types by monitoring and counteracting rising concentrations of specific critical factors, such as TGF-β1. Collectively, these studies shed new insight into the complexity of strict HSC regulation to predictively enhance in vitro HSC self-renewal, and provide evidence that overcoming cell non-autonomous control of HSC self-renewal should enable novel strategies to enhance endogenous stem cell growth. Disclosures: No relevant conflicts of interest to declare.


2021 ◽  
Author(s):  
Josep Mercadal ◽  
Isabel Betegón-Putze ◽  
Nadja Bosch ◽  
Ana I. Caño-Delgado ◽  
Marta Ibañes

AbstractStem cell niches are local microenvironments that preserve their unique identity while communicating with adjacent tissues. In the primary root of Arabidopsis thaliana, the stem cell niche comprises the expression of two transcription factors, BRAVO and WOX5, among others. Intriguingly, these proteins confine their own gene expression to the niche, as evidenced in each mutant background. Here we propose through mathematical modeling that BRAVO confines its own expression domain to the stem cell niche by attenuating its WOX5-dependent diffusible activator. This negative feedback drives WOX5 action to be spatially restricted as well. The results show that WOX5 diffusion and sequestration by binding to BRAVO is sufficient to drive realistic confined BRAVO expression at the stem cell niche. We propose that attenuation of a diffusible activator can be a general mechanism to confine genetic activity to a small region while at the same time maintain signaling within it and with the surrounding cells.


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