scholarly journals Detection of pigeon circoviruses in ticks of sheep and camels in Inner Mongolia, China

2021 ◽  
Author(s):  
Yunyi Kong ◽  
Chao Yan ◽  
Gang Zhang ◽  
Yurong Cai ◽  
Biao He ◽  
...  

Circovirus is one of the smallest known DNA viruses infecting animals. In this report, circovirus was detected in two tick species- Hyalomma asiaticum and Dermacentor nuttalli collected from sheep and camels in Inner Mongolia, China by high-throughput sequencing. The reverse semi-nested PCR assay revealed a complete genomic sequence of 2042 base pairs of cyclic single-stranded DNA (ssDNA). Evolutionary analysis further revealed that it belonged to circovirus with two major open read frames (ORFs) that putatively encode replicase and capsid proteins, respectively. Sequence and phylogenetic analysis suggested that the circovirus belonged to pigeon circovirus. The results demonstrated the presence of pigeon circovirus in ticks in Inner Mongolia, which provide the basis for future exploration of the prevalence of pigeon circovirus in Inner Mongolia and the pathogens carried by ticks in Inner Mongolia.

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Yuancheng Zhou ◽  
Xiuping Zhuo ◽  
Jianqiang Ye ◽  
Yuhan Cai

A complete genomic sequence of Japanese encephalitis virus (JEV) was detected by viral metagenome analysis on aborted piglets. A phylogenetic analysis of this genome reveals that it is highly similar to previously reported India JEV genomes. The complete JEV sequence is 10,718 nucleotides long.


Virology ◽  
1993 ◽  
Vol 194 (2) ◽  
pp. 585-596 ◽  
Author(s):  
E.K. Godeny ◽  
L. Chen ◽  
S.N. Kumar ◽  
S.L. Methven ◽  
E.V. Koonin ◽  
...  

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
F. S. Campos ◽  
M. Kluge ◽  
A. C. Franco ◽  
A. Giongo ◽  
F. P. Valdez ◽  
...  

A complete genomic sequence of porcine parvovirus 2 (PPV-2) was detected by viral metagenome analysis on swine sera. A phylogenetic analysis of this genome reveals that it is highly similar to previously reported North American PPV-2 genomes. The complete PPV-2 sequence is 5,426 nucleotides long.


2005 ◽  
Vol 86 (10) ◽  
pp. 2739-2745 ◽  
Author(s):  
Kathrine Stene-Johansen ◽  
Tom Øystein Jonassen ◽  
Kjell Skaug

Molecular epidemiological studies of hepatitis A outbreaks in Norway showed the emergence of Hepatitis A virus (HAV) genotype IIIA in association with parenteral transmission among haemophiliacs and intravenous drug users. The complete genomic sequence of one of these outbreak isolates, NOR-21, was determined. This is the first complete genomic sequence of HAV genotype IIIA. Phylogenetic analysis showed that genotype IIIA/NOR-21 was genetically distinct from the other human and simian genotypes. Phylogenetic analysis of the nucleotide sequences clearly distinguished the different HAV genotypes, regardless of the genomic region used for analysis, whereas the amino acid sequences showed a more vague distinction between human HAV genotypes I and II. In particular, the inferred phylogeny based on the capsid proteins showed that the human HAV strains were related more closely to each other than to the simian strains. The greatest variability and clearest distinction between genotypes were observed for the polymerase gene. The outbreak isolates of HAV genotype IIIA in this study showed greater nucleotide variability than is generally seen in outbreaks of genotype I. This high nucleotide variability, which may be characteristic of this HAV genotype, the mode of transmission in this outbreak or parallel introductions, is discussed.


Genes ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1212
Author(s):  
J. Spencer Johnston ◽  
Carl E. Hjelmen

Next-generation sequencing provides a nearly complete genomic sequence for model and non-model species alike; however, this wealth of sequence data includes no road map [...]


2016 ◽  
Vol 72 (5) ◽  
pp. 628-633 ◽  
Author(s):  
Yan Li ◽  
Min Wang ◽  
Qian Liu ◽  
Xue Song ◽  
Duobing Wang ◽  
...  

2014 ◽  
Vol 84 (6) ◽  
pp. 595-596
Author(s):  
L.-M. Yindom ◽  
G. Wong ◽  
T. I. de Silva ◽  
S. L. Rowland-Jones

2013 ◽  
Vol 1 (5) ◽  
Author(s):  
I. N. Dominova ◽  
I. V. Kublanov ◽  
O. A. Podosokorskaya ◽  
K. S. Derbikova ◽  
M. V. Patrushev ◽  
...  

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