scholarly journals Identification of a primitive intestinal transcription factor network shared between esophageal adenocarcinoma and its precancerous precursor state

2019 ◽  
Vol 29 (5) ◽  
pp. 723-736 ◽  
Author(s):  
Connor Rogerson ◽  
Edward Britton ◽  
Sarah Withey ◽  
Neil Hanley ◽  
Yeng S. Ang ◽  
...  
2018 ◽  
Author(s):  
Connor Rogerson ◽  
Edward Britton ◽  
Sarah Withey ◽  
Neil Hanley ◽  
Yeng S. Ang ◽  
...  

AbstractOesophageal adenocarcinoma (OAC) is one of the most frequent causes of cancer deaths and yet compared to other common cancers, we know relatively little about the molecular composition of this tumour type. To further our understanding of this cancer we have used open chromatin profiling to decipher the transcriptional regulatory networks that are operational in OAC. We have uncovered a transcription factor network that is usually found in primitive intestinal cells during embryonic development, centred on HNF4A and GATA6. These transcription factors work together to control the OAC transcriptome. Importantly, we show that this network is activated in Barrett’s oesophagus, the putative precursor state to OAC thereby providing novel molecular evidence in support of stepwise malignant transition. Furthermore, we show that HNF4A alone, is sufficient to drive chromatin opening and activation of a Barrett’s-like chromatin signature when expressed in normal human epithelial cells. Collectively, these data provide a new way to categorise OAC at a genome scale and implicate HNF4A activation as a potential pivotal event in regulating its malignant transition from healthy cells.


2007 ◽  
Vol 8 (1) ◽  
pp. 17 ◽  
Author(s):  
Ricardo Saban ◽  
Cindy Simpson ◽  
Carole A Davis ◽  
Igor Dozmorov ◽  
Julie Maier ◽  
...  

2012 ◽  
Vol 142 (1) ◽  
pp. 119-129 ◽  
Author(s):  
Ilaria Laudadio ◽  
Isabelle Manfroid ◽  
Younes Achouri ◽  
Dominic Schmidt ◽  
Michael D. Wilson ◽  
...  

2005 ◽  
Vol 201 (8) ◽  
pp. 1197-1203 ◽  
Author(s):  
Kazu Kikuchi ◽  
Anne Y. Lai ◽  
Chia-Lin Hsu ◽  
Motonari Kondo

Cytokine receptor signals have been suggested to stimulate cell differentiation during hemato/lymphopoiesis. Such action, however, has not been clearly demonstrated. Here, we show that adult B cell development in IL-7−/− and IL-7Rα2/− mice is arrested at the pre–pro-B cell stage due to insufficient expression of the B cell–specific transcription factor EBF and its target genes, which form a transcription factor network in determining B lineage specification. EBF expression is restored in IL-7−/− pre–pro-B cells upon IL-7 stimulation or in IL-7Rα−/− pre–pro-B cells by activation of STAT5, a major signaling molecule downstream of the IL-7R signaling pathway. Furthermore, enforced EBF expression partially rescues B cell development in IL-7Rα−/− mice. Thus, IL-7 receptor signaling is a participant in the formation of the transcription factor network during B lymphopoiesis by up-regulating EBF, allowing stage transition from the pre–pro-B to further maturational stages.


Author(s):  
Harikrishna Nakshatri ◽  
Sunil Badve

Breast cancer is a heterogeneous disease and classification is important for clinical management. At least five subtypes can be identified based on unique gene expression patterns; this subtype classification is distinct from the histopathological classification. The transcription factor network(s) required for the specific gene expression signature in each of these subtypes is currently being elucidated. The transcription factor network composed of the oestrogen (estrogen) receptor α (ERα), FOXA1 and GATA3 may control the gene expression pattern in luminal subtype A breast cancers. Breast cancers that are dependent on this network correspond to well-differentiated and hormone-therapy-responsive tumours with good prognosis. In this review, we discuss the interplay between these transcription factors with a particular emphasis on FOXA1 structure and function, and its ability to control ERα function. Additionally, we discuss modulators of FOXA1 function, ERα–FOXA1–GATA3 downstream targets, and potential therapeutic agents that may increase differentiation through FOXA1.


Bone Research ◽  
2018 ◽  
Vol 6 (1) ◽  
Author(s):  
Heather A. Carey ◽  
Blake E. Hildreth ◽  
Jennifer A. Geisler ◽  
Mara C. Nickel ◽  
Jennifer Cabrera ◽  
...  

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