scholarly journals Utility of Different Gene Enrichment Approaches Toward Identifying and Sequencing the Maize Gene Space

2004 ◽  
Vol 136 (2) ◽  
pp. 3023-3033 ◽  
Author(s):  
Nathan Michael Springer ◽  
Xiequn Xu ◽  
W. Brad Barbazuk
Genome ◽  
2005 ◽  
Vol 48 (6) ◽  
pp. 1120-1126 ◽  
Author(s):  
Didier Lamoureux ◽  
Daniel G Peterson ◽  
Wanlong Li ◽  
John P Fellers ◽  
Bikram S Gill

We report the results of a study on the effectiveness of Cot filtration (CF) in the characterization of the gene space of bread wheat (Triticum aestivum L.), a large genome species (1C = 16 700 Mb) of tremendous agronomic importance. Using published Cot data as a guide, 2 genomic libraries for hexaploid wheat were constructed from the single-stranded DNA collected at Cot values > 1188 and 1639 M·s. Compared with sequences from a whole genome shotgun library from Aegilops tauschii (the D genome donor of bread wheat), the CF libraries exhibited 13.7-fold enrichment in genes, 5.8-fold enrichment in unknown low-copy sequences, and a 3-fold reduction in repetitive DNA. CF is twice as efficient as methylation filtration at enriching wheat genes. This research suggests that, with improvements, CF will be a highly useful tool in sequencing the gene space of wheat.Key words: gene enrichment, renaturation kinetics, gene-rich regions, bread wheat.


FEBS Letters ◽  
2005 ◽  
Vol 579 (18) ◽  
pp. 3867-3871 ◽  
Author(s):  
Nicolas Carels
Keyword(s):  

2020 ◽  
Vol 21 (21) ◽  
pp. 8289
Author(s):  
Mari T. Kaartinen ◽  
Mansi Arora ◽  
Sini Heinonen ◽  
Aila Rissanen ◽  
Jaakko Kaprio ◽  
...  

Transglutaminases TG2 and FXIII-A have recently been linked to adipose tissue biology and obesity, however, human studies for TG family members in adipocytes have not been conducted. In this study, we investigated the association of TGM family members to acquired weight gain in a rare set of monozygotic (MZ) twins discordant for body weight, i.e., heavy–lean twin pairs. We report that F13A1 is the only TGM family member showing significantly altered, higher expression in adipose tissue of the heavier twin. Our previous work linked adipocyte F13A1 to increased weight, body fat mass, adipocyte size, and pro-inflammatory pathways. Here, we explored further the link of F13A1 to adipocyte size in the MZ twins via a previously conducted TWA study that was further mined for genes that specifically associate to hypertrophic adipocytes. We report that differential expression of F13A1 (ΔHeavy–Lean) associated with 47 genes which were linked via gene enrichment analysis to immune response, leucocyte and neutrophil activation, as well as cytokine response and signaling. Our work brings further support to the role of F13A1 in the human adipose tissue pathology, suggesting a role in the cascade that links hypertrophic adipocytes with inflammation.


2019 ◽  
Vol 140 ◽  
pp. 106595 ◽  
Author(s):  
Guoxing Yin ◽  
Yiling Pan ◽  
Anirban Sarker ◽  
Mohammad A. Baki ◽  
Jin-Koo Kim ◽  
...  

Genetika ◽  
2010 ◽  
Vol 42 (1) ◽  
pp. 9-21 ◽  
Author(s):  
Jelena Vancetovic ◽  
Snezana Mladenovic-Drinic ◽  
Milosav Babic ◽  
Dragana Ignjatovic-Micic ◽  
Violeta Andjelkovic

Characterization and evaluation of the genetic resources provide breeders with valuable information on an effective utilization of the genetic resources in breeding programs. In this paper we present the results of different research programs aimed at identification of superior genotypes among MRI gene bank accessions, regarding stress tolerance (drought and herbicides), better nutritional quality (phosphorus) and specific traits (cytoplasmic male sterility - CMS). Fifty-two genotypes were identified as a potential source for drought tolerance. Considering herbicide tolerance only genotypes with resistance to the Pivot were found. Within 100 sources of CMS in the collection S cytoplasm was identified as the predominant type. Phytate analysis of 60 maize populations identified three groups of populations - with low (8), intermediate (25) and high (27) phytate content. The results of these researches, which are a part of pre-breeding activities, will be included in MRI breeding programs, with the aim of developing new genotypes with improved traits important in commercial maize breeding and seed production.


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