An Atriplex nummularia cDNA with Sequence Relatedness to the Algal Caltractin Gene

ABSTRACTWe present the complete genome sequences of four members of a novel group of phages infectingStreptococcus thermophilus, designated here as the 987 group. Members of this phage group appear to have resulted from genetic exchange events, as evidenced by their “hybrid” genomic architecture, exhibiting DNA sequence relatedness to the morphogenesis modules of certain P335 groupLactococcus lactisphages and to the replication modules ofS. thermophilusphages. All four identified members of the 987 phage group were shown to elicit adsorption affinity to both their cognateS. thermophilushosts and a particularL. lactisstarter strain. The receptor binding protein of one of these phages (as a representative of this novel group) was defined using an adsorption inhibition assay. The emergence of a novel phage group infectingS. thermophilushighlights the continuous need for phage monitoring and development of new phage control measures.IMPORTANCEPhage predation ofS. thermophilusis an important issue for the dairy industry, where viral contamination can lead to fermentation inefficiency or complete fermentation failure. Genome information and phage-host interaction studies ofS. thermophilusphages, particularly those emerging in the marketplace, are an important part of limiting the detrimental impact of these viruses in the dairy environment.

Download Full-text

Acuticoccus mangrovi sp. nov., with an antibacterial property, isolated from mangrove sediment

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY ◽

10.1099/ijsem.0.005137 ◽

2021 ◽

Vol 71 (12) ◽

Author(s):

Zhe Li ◽

Wenjin Hu ◽

Shushi Huang ◽

Yuanlin Huang ◽

Fei Li ◽

...

Keyword(s):

Gene Clusters ◽

Amino Acid Identity ◽

Mangrove Sediment ◽

Species Discrimination ◽

Rrna Gene ◽

Beibu Gulf ◽

Respiratory Quinone ◽

Content Type ◽

Link Type ◽

Sequence Relatedness

A Gram-stain-negative, aerobic, milky white bacterium, designated B2012T, was isolated from mangrove sediment collected at Beibu Gulf, South China Sea. Antimicrobial activity assay revealed that the isolate possesses the capability of producing antibacterial compounds. Strain B2012T shared the highest 16S rRNA gene sequence relatedness (96.9–95.5 %) with members of the genus Acuticoccus . The isolate and all known Acuticoccus species contain Q-10 as the main respiratory quinone and have the same polar lipid components (phosphatidylcholine, unidentified glycolipid, unidentified lipid, unidentified amino lipid and phosphatidylglycerol). However, genomic relatedness referred by values of average nucleotide identity, digital DNA–DNA hybridization, average amino acid identity and the percentage of conserved proteins between strain B2012T and other type strains of the genus Acuticoccus were below the proposed thresholds for species discrimination. The genome of strain B2012T was assembled into 65 scaffolds with an N50 size of 244239 bp, resulting in a 5.5 Mb genome size. Eight secondary metabolite biosynthetic gene clusters were detected in this genome, including three non-ribosomal peptide biosynthetic loci encoding yet unknown natural products. Strain B2012T displayed moderately halophilic and alkaliphilic properties, growing optimally at 2–3 % (w/v) NaCl concentration and at pH 8–9. The major cellular fatty acids (>10 %) were anteiso-C15 : 0, C16 : 0 dimethyl aldehyde (DMA) and C16 : 0. Combined data from phenotypic, genotypic and chemotaxonomic analyses suggested that strain B2012T represents a novel species of the genus Acuticoccus , for which the name Acuticoccus mangrovi sp. nov. is proposed. The type strain of the type species is B2012T (=MCCC 1K04418T=KCTC 72962T).

Download Full-text