scholarly journals 6-Methyluracil: a redetermination of polymorph (II)

IUCrData ◽  
2019 ◽  
Vol 4 (6) ◽  
Author(s):  
Gustavo Portalone

6-Methyluracil, C5H6N2O2, exists in two crystalline phases: form (I), monoclinic, space group P21/c [Reck et al. (1988). Acta Cryst. A44, 417–421] and form (II), monoclinic, space group C2/c [Leonidov et al. (1993). Russ. J. Phys. Chem. 67, 2220–2223]. The structure of polymorph (II) has been redetermined providing a significant increase in the precision of the derived geometric parameters. In the crystal, molecules form ribbons approximately running parallel to the c-axis direction through N—H...O hydrogen bonds. The radical differences observed between the crystal packing of the two polymorphs may be responsible in form (II) for an increase in the contribution of the polar canonical forms C—(O−)=N—H+ relative to the neutral canonical form C(=O)—N—H induced by hydrogen-bonding interactions.

2005 ◽  
Vol 61 (4) ◽  
pp. 464-472 ◽  
Author(s):  
Gary S. Nichol ◽  
William Clegg

The crystal structure of barbituric acid dihydrate (C4H4N2O3·2H2O) has twice been reported as orthorhombic, space group Pnma, with all atoms (except for CH2 H atoms) lying on the mirror plane [Al-Karaghouli et al. (1977). Acta Cryst. B33, 1655–1660; Jeffrey et al. (1961). Acta Cryst. 14, 881–887]. The present study has found that at low temperatures, below 200 K, the crystal structure is no longer orthorhombic but is non-merohedrally twinned monoclinic, space group P21/n. This phase is stable down to 100 K. Above 220 K the crystal structure is orthorhombic, and between 200 and 220 K the structure undergoes a phase change, with the monoclinic-to-orthorhombic phase transition itself taking place at around 216–217 K. The size of the β angle in the monoclinic structure is temperature dependent; at 100 K β is around 94° and it decreases in magnitude towards 90° as the temperature increases. Although the hydrogen-bonding motifs are the same for both crystal systems, there are significant differences in the crystal packing, in particular the out-of-plane displacement of the two water molecules and the sp 3-hybridized C atom of barbituric acid.


2014 ◽  
Vol 70 (7) ◽  
pp. m272-m273
Author(s):  
Saravanan Gowrisankar ◽  
Helfried Neumann ◽  
Anke Spannenberg ◽  
Matthias Beller

The title compound, [Ru(CO3)(η6-C6H6){(C6H11)2P(CH2C10H7)}]·3CHCl3, was synthesized by carbonation of [RuCl2(η6-C6H6){(C6H11)2P(CH2C10H7)}] with NaHCO3in methanol at room temperature. The RuIIatom is surrounded by a benzene ligand, a chelating carbonate group and a phosphane ligand in a piano-stool configuration. The crystal packing is consolidated by C—H...O and C—H...Cl hydrogen-bonding interactions between adjacent metal complexes and between the complexes and the solvent molecules. The asymmetric unit contains one metal complex and three chloroform solvent molecules of which only one was modelled. The estimated diffraction contributions of the other two strongly disordered chloroform solvent molecules were substracted from the observed diffraction data using the SQUEEZE procedure inPLATON[Spek (2009).Acta Cryst.D65, 148–155].


Author(s):  
Shuichao Dong ◽  
Yaqiu Tao ◽  
Xiaodong Shen ◽  
Zhigang Pan

A new polymorph of bis(2-aminopyridinium) fumarate–fumaric acid (1/1), 2C5H7N2+·C4H2O42−·C4H4O4, was obtained and its crystal structure determined by powder X-ray diffraction. The new polymorph (form II) crystallizes in the triclinic system (space groupP\overline{1}), while the previous reported polymorph [form I; Ballabh, Trivedi, Dastidar & Suresh (2002).CrystEngComm,4, 135–142; Büyükgüngör, Odabaşoğlu, Albayrak & Lönnecke (2004).Acta Cryst.C60, o470–o472] is monoclinic (space groupP21/c). In both forms I and II, the asymmetric unit consists of one 2-aminopyridinium cation, half a fumaric acid molecule and half a fumarate dianion. The fumarate dianion is involved in hydrogen bonding with two neighbouring 2-aminopyridinium cations to form a hydrogen-bonded trimer in both forms. In form II, the hydrogen-bonded trimers are interlinked across centres of inversionviapairs of N—H...O hydrogen bonds, whereas such trimers are joinedviasingle N—H...O hydrogen bonds in form I, leading to different packing modes for forms I and II. The results demonstrate the relevance and application of the powder diffraction method in the study of polymorphism of organic molecular materials.


2014 ◽  
Vol 70 (6) ◽  
pp. o699-o699
Author(s):  
Wei-Wei Fu ◽  
Yan-Fei Liang ◽  
Yang Liu ◽  
Xiao-Ming Zhu

The title compound, C20H14N4, is a new polymorph of the previously reported structures, which were orthorhombic, space groupPbca[Beiet al.(2000).Acta Cryst.C56, 718–719] and monoclinic, space groupP21/c[Duddet al.(2003).Green Chem.5, 187–192]. The asymmetric unit consists of two independent molecules in which the dihedral angels between the central benzene ring and the outer benzimidazole ring systems are 16.81 (10) and 14.23 (10)° in one molecule and 26.09 (10) and 37.29 (10)° in the other. In the crystal, molecules are linked by N—H...N and C—H...N hydrogen bonds into a tape running along thec-axis direction.


2001 ◽  
Vol 56 (9) ◽  
pp. 871-880 ◽  
Author(s):  
Gerhard Müller ◽  
Martin Lutz

Abstract N-Acetyl-L-alanine methylester crystallizes in the orthorhombic space group P212121 with one molecule in the asymmetric unit (a = 7.768(1), b = 9.606(1), c = 10.215(2) Å, Z = 4). The individual molecules are linked into infinite strands by intermolecular hydrogen bonds between the amide hydrogen atom as donor and the acetyl oxygen atom as acceptor. The strands run parallel to the crystallographic b axis. The respective racemate, N-acetyl-DL-alanine methylester, crystallizes in the monoclinic space group P 21/n with three molecules in the asymmetric unit (a = 14.442(3), b = 8.467(2), c = 19.336(5) Å, β = 93.68(1)°, Z = 12). Again, the individual molecules are linked into infinite strands by N-H···O= Cacetyl hydrogen bonds which run along the crystallographic a axis. The individual strands are made up of molecules of opposite chirality in a 2:1 ratio. More specifically, one set of strands consists of molecules in the sequence [D, D, L,]∞ while a second set has the sequence [L, L, D]∞ as imposed by the centrosymmetry o f the space group. Thus, although crystals o f N-acetyl-DL-alanine methylester contain equal amounts of the molecules of opposite chirality, the strand formation through intermolecular hydrogen bonds leads to an incom plete resolution of the racemic mixture of molecules within one strand. The reason for the preference of the observed structure o f N-acetyl-DL-alanine methylester over spontaneous resolution is seen in the optimization of hydrogen bonding within one strand versus the overall crystal packing energy. Some principles of the crystallization of achiral molecules, chiral molecules, and racemates are briefly reviewed, as is the phenomenon of spontaneous resolution.


2014 ◽  
Vol 70 (6) ◽  
pp. o645-o646
Author(s):  
Shaaban K. Mohamed ◽  
Joel T. Mague ◽  
Mehmet Akkurt ◽  
Herman Potgieter ◽  
Mustafa R. Albayati

The title compound, C21H17N3O3, is a new polymorph of an already published structure [Shashidharet al.(2006).Acta Cryst.E62, o4473–o4475]. The previously reported structure crystallizes in the monoclinic space groupC2/c, whereas the structure reported here is in the tetragonal space groupI41/a. The bond lengths and angles are similar in both structures. The molecule adopts an extended conformationviaintramolecular N—H...O and O—H...N hydrogen bonds; the terminal phenyl ring and the hydroxylphenyl ring are twisted with respect to the central benzene ring by 44.43 (7) and 21.99 (8)°, respectively. In the crystal, molecules are linked by N—H...O hydrogen bonds, weak C—H...O hydrogen bonds and weak C—H...π interactions into a three-dimensional supramolecular network.


IUCrData ◽  
2022 ◽  
Vol 7 (1) ◽  
Author(s):  
Lin Liu ◽  
Zheng-Bo Han

In the title compound, [Cu(C9H6N3O2)2(C2H7N)2], the Cu2+ cation is situated on an inversion center and is coordinated by the N atoms of two dimethylamine ligands and the carboxylate O atoms of two 4-(1,2,4-triazol-1-yl)benzoate anions, leading to a slightly distorted square-planar N2O2 coordination environment. In the crystal, intermolecular N—H...N hydrogen bonds between the amine function and the central N atom of the triazole ring lead to the formation of ribbons parallel to [1\overline{1}1]. Weak intermolecular C—H...O hydrogen-bonding interactions are also observed that consolidate the crystal packing.


Author(s):  
Manuel Stapf ◽  
Betty Leibiger ◽  
Anke Schwarzer ◽  
Monika Mazik

The title compounds, C23H25Br2NO2 (1) and C31H29BrN2O4 (2), crystallize in the space group P21/n with two (1-A and 1-B) and one molecules, respectively, in the asymmetric unit of the cell. The molecular conformation of these compounds is stabilized by intramolecular C—H...O hydrogen bonds and C—H...N or C—H...π interactions. The crystal structure of 1 features a relatively strong Br...O=C halogen bond, which is not observed in the case of 2. Both crystal structures are characterized by the presence of C—H...Br hydrogen bonds and numerous intermolecular C—H...O hydrogen-bonding interactions.


1989 ◽  
Vol 42 (7) ◽  
pp. 1035 ◽  
Author(s):  
PV Bernhardt ◽  
GA Lawrance ◽  
BW Skelton ◽  
AH White

Crystals of [H4L]1.5[Fe(CN)6]2.3H2O.¾HCN form readily from an aqueous solution of L=6HCI (L = 6,13-dimethyl-1,4,8,11- tetraazacyclotetradecane-6,13-diamine) and Na3 [Fe(CN)6]. The compound is monoclinic, space group P21/c, a 7.982(6), b 20.785(3), c 26.81(1) � , β 101.37(5), Z = 4. Protonation is complete at the terminal primary nitrogens, but in the ring one trans pair is protonated and the other not, with short trans H…H distances. Hydrogen-bonding interactions are a feature of the structure, but are concentrated more strongly at the terminal NH3+ groups. Interactions of [Fe(CN)6]3- nitrogens with both terminal amine protons and macrocycle ring amine protons are observed, and this structure represents a further example of a 'super complex' involving a complex anion and a protonated polyaza macrocycle.


1996 ◽  
Vol 52 (6) ◽  
pp. 999-1006 ◽  
Author(s):  
C. H. Görbitz ◽  
P. H. Backe

L-Val-L-Gln crystallizes in the orthorhombic space group P21212 with a = 16.419 (3), b = 15.309 (3) and c = 4.708 (1) Å. The final wR(F o 2) is 0.100 for 2044 independent reflections, R(Fo ) = 0.050 for 1475 reflections with I > 2.0σ(I). L-Glu-L-Val crystallizes in the monoclinic space group P21 with a = 6.487 (2), b = 5.505 (2), c = 16.741 (4) Å and β = 97.22 (2)°. The final wR(F F o 2) is 0.111 for 1920 independent reflections, R(Fo ) = 0.047 for 1576 reflections with I > 2.0σ(I). Molecular geometries are normal, except for a unique eclipsed orientation of the charged amino group of L-Glu-L-Val. Dipeptides with a N-terminal hydrophobic residue and C-terminal hydrophilic residue are shown to have crystal packing patterns fundamentally different from those of dipeptides with the same types of residues in reversed order. Accordingly, the structure of L-Val-L-Glu [Eggleston (1984). Acta Cryst. C40, 1250 –1252] is rather similar to L-Val-L-Gln, but different from its retroanalogue L-Glu-L-Val. Nevertheless, the pairing of hydrogen-bond donors and acceptors is the same for L-Val-L-Glu and L-Glu-L-Val, indicating very distinct hydrogen-bonding preferences. This is the first demonstration of such a coincidence among dipeptide structures. The differences between L-Val-L-Glu and L-Val-L-Gln structures stem from modifications of the molecular geometry and cell parameters due to the formation of an additional hydrogen bond from the extra donor in the L-Gln side chain.


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